Gene Sama_1776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1776 
Symbol 
ID4604026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2171156 
End bp2172442 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content53% 
IMG OID639781142 
Productseryl-tRNA synthetase 
Protein accessionYP_927651 
Protein GI119774911 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0172] Seryl-tRNA synthetase 
TIGRFAM ID[TIGR00414] seryl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0781762 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00882047 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTAGATA CCAAATATCT CCGTAATGAA CTGGAATTCA CCAAAGAGCG TCTGGCCGCA 
CGCGGCTTCG CGCTGGACAT CGATCATCTC AAAGCGCTGG AAGAAAAGCG CAAGTCGCTG
CAGGTCGCCA CTGAAGAGCT GCAGGCCAGT CGCAACGCAA TTTCCAAATC CATCGGTCAG
GCAAAGTCCC GTGGTGAAGA CGTCGCGCCC ATCATGGCTC AGGTAGGTAA CCTGGGTACC
GAGCTTGAGG CCAAAAAAAT CGAATTGGCA GCGCTGCTGG AAGAAATCAA CGCCATTGCC
ATGTCAGTGC CCAACCTGCC TGATGAGTCA GTGCCTGTTG GGAAAGACGA AAGTGAAAAC
GTTGAAATTC GCCGTTGGGG CGAGCCACGC AGCTTTGATT TTGCAGTTAA AGATCATGTG
GATCTGGGTG AAACCCTGGG TGGTTTGGAT TTCAAGAGCG CGGTTAAGAT CACCGGCTCA
CGCTTTATCG TTATGAAAGG CCAGATTGCC CGCATGCACC GCGCACTGGC GCAGTTTATG
CTGGATCTGC ATACCATTGA GCACGGTTAT ACTGAGGCCT ATGTGCCTTT GCTGGTAAAC
ACAGACAGTT TACTGGGTAC TGGTCAGTTA CCCAAGTTCA GTGAAGACCT GTTCAACCTC
AAGCCTGCGA CCGAAGAAGG TCAGGCACTG AGCCTGATCC CAACGGCAGA AGTACCAGTG
ACCAACCTGG TGCGTGATAC CATCCTTGAT GAGGCCGACC TGCCTATCAA GATTACCGCA
CACACGGCAT GCTTCCGCTC CGAAGCCGGT TCATACGGTA AAGATACCCG TGGTCTTATC
CGTCAGCACC AGTTCGACAA AGTGGAAATG GTGCAGATAG TTAAGCCCGA AAACTCCATG
GATGCCCTTG AGCAAATGGT TGGCCACGCC GAAAACGTAC TGAAAAAGCT GGGTCTGCCA
TACCGCACAG TGGTGCTTTG CACCGGCGAC ATGGGCTTTG GTGCCGCCAA GACCTACGAC
ATTGAAGTAT GGCTGCCTGC GCAGAACACC TATCGTGAAA TCTCTTCGTG CTCTAACGTG
AAGGATTTCC AGGCCCGCCG TATGCAAGCC CGCTATCGCA GCAAAGAAGA CAACAAGCCT
GCACTGGTTC ACACCCTCAA TGGTTCAGGT CTTGCGGTAG GTCGTACTCT GGTAGCGATT
CTGGAGAACT ATCAGAATGC CGATGGTACA GTTACCGTGC CTGAAGCCCT GCGCCCATAT
ATGGGTGGTA TTGAGCAACT CGGTTAA
 
Protein sequence
MLDTKYLRNE LEFTKERLAA RGFALDIDHL KALEEKRKSL QVATEELQAS RNAISKSIGQ 
AKSRGEDVAP IMAQVGNLGT ELEAKKIELA ALLEEINAIA MSVPNLPDES VPVGKDESEN
VEIRRWGEPR SFDFAVKDHV DLGETLGGLD FKSAVKITGS RFIVMKGQIA RMHRALAQFM
LDLHTIEHGY TEAYVPLLVN TDSLLGTGQL PKFSEDLFNL KPATEEGQAL SLIPTAEVPV
TNLVRDTILD EADLPIKITA HTACFRSEAG SYGKDTRGLI RQHQFDKVEM VQIVKPENSM
DALEQMVGHA ENVLKKLGLP YRTVVLCTGD MGFGAAKTYD IEVWLPAQNT YREISSCSNV
KDFQARRMQA RYRSKEDNKP ALVHTLNGSG LAVGRTLVAI LENYQNADGT VTVPEALRPY
MGGIEQLG