Gene Sama_1769 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1769 
Symbol 
ID4604019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2162836 
End bp2163789 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content53% 
IMG OID639781135 
Productthioredoxin reductase 
Protein accessionYP_927644 
Protein GI119774904 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0492] Thioredoxin reductase 
TIGRFAM ID[TIGR01292] thioredoxin-disulfide reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000446804 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0215764 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAG CCAAACACAG CCAACTGCTG ATCCTCGGAT CGGGCCCAGC TGGCTACACT 
GCCGCCGTCT ACGCTGCACG TGCAAACCTG AACCCAGTGA TGATCACAGG TCTCCAACAA
GGTGGTCAGC TGACTACCAC GACCGAAGTT GAAAACTGGC CAGGTGATGC CGAAGGTTTG
ACCGGACCAG GCCTGATGGC CCGTATGCAG GAGCATGCCG AAAAGTTCAA CACCGAAATT
ATCTTCGACC ATATTAACGA AGTGACCCTC ACTGAACGTC CTTTCCGCTT GAAAGGTGAT
AATGGCGAGT ACACCTGTGA TGCGCTTATC ATTGCCACCG GCGCATCGGC CAAGTACCTG
GGGCTGCCTT CTGAAGATGC TTTTAAAGGT CGCGGCGTTT CAGCCTGCGC TACCTGTGAT
GGTTTTTTCT ATCGCAATCA AAAGGTCGCA GTAATCGGTG GTGGTAACAC CGCGGTGGAA
GAGGCCCTGT ATCTGTCCAA CATCGCCTCT GAAGTTCACC TCATCCACCG TCGTGACAGC
TTCCGCTCAG AGAAAATTCT GATTGACCGT CTGATGGACA AGGTTGCAAA CGGCAACATC
ATTCTGCATT TGGACAAGAC GCTGGATGAA GTGGTGGGCG ACAATATGGG TGTGACCGGT
GTTAAGCTGA AATCCACCAA AGATGACTCT ACTGAAGCAT TTGATGTTGC GGGTGTTTTC
GTCGCTATTG GTCACAGCCC CAATACCGGC ATCTTCGAGG GTCAGCTGGA GATGAACAAT
GGTTACATCA AGGTGCAAAG CGGTCTGAAC GGCAATGCAA CCCAAACCAG CATCGAGGGC
GTATTTGCTG CCGGTGATGT GATGGACCAA CACTATCGTC AGGCCATTAC CTCAGCCGGT
ACCGGCTGTA TGGCTGCACT GGATGCCGAG CGTTATTTGG ACGCCAAGCA CTGA
 
Protein sequence
MSQAKHSQLL ILGSGPAGYT AAVYAARANL NPVMITGLQQ GGQLTTTTEV ENWPGDAEGL 
TGPGLMARMQ EHAEKFNTEI IFDHINEVTL TERPFRLKGD NGEYTCDALI IATGASAKYL
GLPSEDAFKG RGVSACATCD GFFYRNQKVA VIGGGNTAVE EALYLSNIAS EVHLIHRRDS
FRSEKILIDR LMDKVANGNI ILHLDKTLDE VVGDNMGVTG VKLKSTKDDS TEAFDVAGVF
VAIGHSPNTG IFEGQLEMNN GYIKVQSGLN GNATQTSIEG VFAAGDVMDQ HYRQAITSAG
TGCMAALDAE RYLDAKH