| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1764 |
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| Symbol | |
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| ID | 4604014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2158599 |
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| End bp | 2159357 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781130 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_927639 |
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| Protein GI | 119774899 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.749088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0259189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAAT CTTACACAGA CACGCCCCCT CGCTGGGCAC TTATCACAGG TGCAGCCAAA
CGTATTGGTG CCGCCATTGC AACCAAACTC CATCAGGAGG GCTGGAATGT GTTTATCCAC
TGCCACCACT CTGTTGATGA AGCCCAGCGA CTTGCTGATG TGTTATGTCA AAAGCGCGCT
GGCTCAGCCC AAGTCATTTG TGCAGACCTC GTACAAGCAG ACAGCACCAC GCATATAAGG
CATCAGATAG TGCGAAGCGG CGCGTCACTT GCACTGTTGG TGAATAATGC GTCACGGTTT
GACAAAGACC CGGCAAACCC AACCCTTGCG CACGCACAAA CCCTGATGGG CGTAAACTGC
CTGCAACCTT ATCTACTTGC ATTTGCCCTG GCGCCACTTT TGGCGTCAGC GCAGGGCAGT
GTGATTAATC TTTGCGATAT CCACGGCCAG CGGCCTCTTC GCCAGCATGG ATTATACTCA
ATATCAAAGG CTGCACTTGC CATGGCGACG TTGTCATTGG CACAGGAACT GGCGCCCGCG
GTGCGGGTCA ATGGCATTGC CCCGGGAGCC ATACTCTGGC CAGAAACCGC GGGGGCCAAG
CCAAACAAGG TTCTTGCCGA AATCCCCCTC GCCCGTGCCG GTGCGCCTTC GGATATCGCC
AACCTGGTCA GCTATCTTGC CAACGCTGAC TACATCAGCG GTCAAATCAT TGCTGTTGAC
GGGGGGCGTA GTGCGACCGG CTATCTGGGA GCAGGCTGA
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| Protein sequence | MTESYTDTPP RWALITGAAK RIGAAIATKL HQEGWNVFIH CHHSVDEAQR LADVLCQKRA
GSAQVICADL VQADSTTHIR HQIVRSGASL ALLVNNASRF DKDPANPTLA HAQTLMGVNC
LQPYLLAFAL APLLASAQGS VINLCDIHGQ RPLRQHGLYS ISKAALAMAT LSLAQELAPA
VRVNGIAPGA ILWPETAGAK PNKVLAEIPL ARAGAPSDIA NLVSYLANAD YISGQIIAVD
GGRSATGYLG AG
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