Gene Sama_1756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1756 
Symbol 
ID4604006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2147502 
End bp2147930 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content53% 
IMG OID639781120 
ProductMarR family transcriptional regulator 
Protein accessionYP_927631 
Protein GI119774891 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00763992 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATATCA ATCAGGATTT AAATCGGGCT CTGGTGGAGT TCTTTGAAGG CATGGCGGCC 
TGGGAGCATC AATTGGTGGA AGGCAGTGGT TTGTTGCTGC CGGTCATGCA TACGCTGGAG
CTACTGGGTC TTTACGGCCC CATGAGAATG ACGGATTTGG CGCATAAGCT CAGCATCAGT
ACCGGCACTC TCACCGCCCG CATCGATCGC ATGGAGAAAG AGGGGCTTGT TACCCGGATT
GCCAATCCCG AAGACAGGCG CTCGCTGCTG ATTGCGCTCA CAGAGCAGGG CCTGGCGCAC
TTTTCTACCC ACGATGAGGC ACATCTTCAT CTGACTGAAG ATCTGATTGC GGCATTCAGT
CCTGAAGATA AGCAAAACTT ACTGGGCATG CTCGAGAAAA TGAACCACCA TTTCCGAAAG
CCAGAATAG
 
Protein sequence
MDINQDLNRA LVEFFEGMAA WEHQLVEGSG LLLPVMHTLE LLGLYGPMRM TDLAHKLSIS 
TGTLTARIDR MEKEGLVTRI ANPEDRRSLL IALTEQGLAH FSTHDEAHLH LTEDLIAAFS
PEDKQNLLGM LEKMNHHFRK PE