| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1744 |
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| Symbol | |
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| ID | 4603994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2134055 |
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| End bp | 2135719 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781107 |
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| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
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| Protein accession | YP_927619 |
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| Protein GI | 119774879 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0368458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00325312 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGGTT TACAGGCTAC CAAAATGACA AAGGCGCTCG TTCGCTCCCT GGCAGGACTA
TCGATATCAT TTGCATTTGG GGTAGGAGCC ACTCCCTGGC TTTCCCTTGA TGTGGAAAGC
ACGGTGACAG CGTCTCCTTC AGCAAGTGGT CAACCATTGG AAGCAACTGA GGTGCCCGAT
AACGCGCTTG TCGAGCCGCT CTTGCCAGAA CCCACGCCTA TCAAAGAGGA GCGCGGCGCA
GAGCCTGCCT TTTTCGCTGA TACCCCATCT TCCATCCCGC CCGCCAGTTC GCTTTCTCCG
CTGAAGGATA TTGCCCCTGC CTGGTACCTT GCCATCAAGC CCAAACAAAC CAACGTCGCC
GTACTTGCCG TCGATCTGAA AACCCAGCAG GTCATTATCA GCGATAACAG CGAACGCGCC
ATGTTGCCTG CCAGTGTGCA AAAGTTGCTG CTGGCATTGG CGGCGCAGCA TACCCTCGGG
CCGGATTTTC GCTTTCATAC CCAGCTTTTT GTTCAGGGGT TTAAACCTCC TGTGCTCGAG
CGCCTCTATA TTGGCTTTAG CGGCGACCCA CTGCTCACCA GCGCCGAGCT CAGCGCCCTG
CTTGGTAGCC TTAAACAGCA AGGCGTACGC ACCATTAATC AGGTTTATCT GGTTTCTGCC
GTCGATAAGA GCGATAAGGC ACCCGGATGG GTTTGGGACG ACCTGGGGGT TTGCTACGCC
TCACCCGTTG CCGAGTTCAG TCTCGATAAA AATTGCGTTA AGGCATCATT GCGACCAACC
GAAAAAGGTG ATGGCACCTA CGTGAGATTG GCAAAAGATG CAGCAATATC CATTGAAAAT
CAGCTGAACT ATCGACCTGG GGCCAGCTTC AAAGAATGCA GCCCTCACCT GTCGGTTGTG
GGACCTAACC GCTACCTGCT CCATGGCTGC TACAGCGGCA AACAAGCCCT TCCCTTATCC
ATTGCAGTGA CAGACACAGA TGCGTGGTTA CAGGAAAAGG TTGCAGGCCT TTTGAAAGCT
GCCGGATTCA ACTCCCACAC ACCCAAGCGT TTACATACGT TGCCTGCCAA TGCCCACCTG
ATTGCTGACC ATCAGTCGGC GACCATGGAC TCCTTGCTGA GTGAAATGCT CAAAGAGTCG
GATAACCTGA TTGCCGATGC GCTCCTTAAG CAATTGGGTA AGCGCAAGGG GCAGGATGAG
TCAGACTTCT ATCAGGGCAG TAAGGAAATG GCAGCCAATT TGACCTTGCT CGGCGTTGAC
CTGTCCAGCG CCAATCTGGT TGATGGCTCT GGCTTATCAC GCTACAACCT GCTTAATGCC
CGCCAATTAA TGCAAACACT TCTGTTGATC CATCACACAG AAGCATACGC CTCCCTCAAA
GATGGGCTAC CAGTGTCAGG AAAAGACGGC ACGCTGCTTT ACAAACGCGG TTTCAATTCG
CTGCCGTTAA AAGACCGGGT TCAGGCTAAA ACCGGCAGTA TGCAAGGTGT GTCAAACCTG
GCGGGCTTTT TACGCAGTGG TGATAGGGAA TACGCTTTTG TGGTACTTGA GAACGGGTTG
GTAGAGCCTG AAAGCCAAAA CGGCAAACGT AAACCGGGAT TTGCCGCCAC CTTACTTAAA
GCCCTGTTAC AGCACGAACC ACAGATCATG TCGGCACAAA AATGA
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| Protein sequence | MKGLQATKMT KALVRSLAGL SISFAFGVGA TPWLSLDVES TVTASPSASG QPLEATEVPD
NALVEPLLPE PTPIKEERGA EPAFFADTPS SIPPASSLSP LKDIAPAWYL AIKPKQTNVA
VLAVDLKTQQ VIISDNSERA MLPASVQKLL LALAAQHTLG PDFRFHTQLF VQGFKPPVLE
RLYIGFSGDP LLTSAELSAL LGSLKQQGVR TINQVYLVSA VDKSDKAPGW VWDDLGVCYA
SPVAEFSLDK NCVKASLRPT EKGDGTYVRL AKDAAISIEN QLNYRPGASF KECSPHLSVV
GPNRYLLHGC YSGKQALPLS IAVTDTDAWL QEKVAGLLKA AGFNSHTPKR LHTLPANAHL
IADHQSATMD SLLSEMLKES DNLIADALLK QLGKRKGQDE SDFYQGSKEM AANLTLLGVD
LSSANLVDGS GLSRYNLLNA RQLMQTLLLI HHTEAYASLK DGLPVSGKDG TLLYKRGFNS
LPLKDRVQAK TGSMQGVSNL AGFLRSGDRE YAFVVLENGL VEPESQNGKR KPGFAATLLK
ALLQHEPQIM SAQK
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