| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1743 |
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| Symbol | |
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| ID | 4603993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2132170 |
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| End bp | 2133906 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781106 |
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| Product | acyl-CoA dehydrogenase family protein |
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| Protein accession | YP_927618 |
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| Protein GI | 119774878 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0351392 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00338381 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCCCT ACCAAGCGCC ACTCGGCGAG ATGCGTTTTT TGCTGGAACA TGTATTTAAT
GCCCAAGCGA CCTGGCAAGG TCTTGCGTCC CTCGACGGCA TGGTTGATAT GGATACCGCA
CTGGCGATTT TAGAAGAAGC CGCCAAACTG AACAGCGAAT TGGTTCATCC TATCAACCGT
GCTGGTGATG AAGAGGGCGT TGGCTTCAGT GACGGTAGGG TAACCACGCC CAAGGGTTAC
AAAGAGGCCT ATAACGCCTT TGTTGAAGGC GGCTGGGTTG GCCTTAGCGG TGACCCGGAA
TATGGCGGCA TGGGGATGCC CAAGATGCTC GGCGTGCTGG TCGACGAAAT GGGCTACAGC
GCCTGTAACG CATTTAATCT CTATGGCTCA CTGACTGCAG GGGCGGCGCT GGCCATTAAT
GCTCATGGTA CAGAAGAGCT TAAGAGCACC TATTTGCCCA AGCTCTACAG TGGTGAATGG
GCTGGTGCTA TGGATATGAC AGAGCCACAG GCGGGTTCCG ATCTTCGTCA TATCCGCACT
CGCGCAGAGC CCCAGGAAGA CGGCAGTTAT CTGATAACAG GCAGTAAAAT CTTTATTACC
GGTGGCGATC AGGACTTGAC TGAAAACGTT ATCCACTTGG TGCTGGCAAA GATTAGCGGC
TCCAACACTC TGTCGCTGTT TTTGGTTCCC AAAATCGGCG TCGATGACCA GGGGAATCTG
ACGGAGCCCA ACGGTGTTTC TGTGGGCAGC ATAGAGCACA AGATGGGGCT TAAGGGCTCG
GCGACCTGCG TTATGAACTT CGACAGTGCC CGTGGTTGGC TTATTGGCCG CGAAAACAAA
GGGCTCGCCT GTATGTTCAC CATGATGAAC TATGAGCGCC TTGCCATCGG TATTCAGGGG
CTTGGCAGTG CACAGGCTGC GGTGCAAATG GCATCTGACT ATGCCAGGGA GCGTTTGCAG
GGGAATGCCG TTGGCAGCAC GGCAGCGGCC GATCCCATTT TGGTCCATGG CGATGTTCGC
CGTATGCTGC TCACCACCCG GACACTTACC GATGCCGGCC GGGCACTCGC CGTACACACA
GGCAAGCAAT TGGATTTGGC CAAGTTCGCC GATGATGACG CCGTTAAAAC CAAGGCGGGG
CGTTATGTGG GACTTTTGAC CCCGGTGGCA AAGGCCTTTT TAACTGACCG AGGCCTGGAT
ATCACCATCA TGGCGCAGCA GGTATTTGGT GGCCATGGTT ATATCCGTGA AACCGGGATT
GAGCAGCTGG TGCGTGACAC CCGTATTGCC CAGATTTACG AGGGTACCAA CGGCATTCAG
GCCATCGACT TTTTGGGCCG TAAAGTCACA GGCGATAATC TGGCGACGGT TAAGGAGTTT
ATCGCCGAGC ATATTGAGGT GCTCAGTGAT ACCTGTGACA AGGCCAATTC ACTCAGAGTG
GGTTTCGCAG ATTTCGTCGC TGTAGCGACC TGGATTAACG ATAATAAGTT AAGCCGTCCT
GCGTTGATCA ATTCGGTGGC AGTAGAGATG CTGGATGCTT TTGGTTATCT GCTCTATGGC
TATTATCACT TGCTGATGCG TGATGCGGCC CGCGCCGCCG ACAGTGAGTT TGCTGCCGCA
AAAGCGGCTT ACTGTGACTA TTACTTTGCC AAGCTGATGC CTCGAGCAGA CGCACTGCTG
CGGGCCGCAA AAGCCGGTGA TGAGCTTTTG ATGTCACTGC CTGAAACCTG TTTCTAA
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| Protein sequence | MNPYQAPLGE MRFLLEHVFN AQATWQGLAS LDGMVDMDTA LAILEEAAKL NSELVHPINR
AGDEEGVGFS DGRVTTPKGY KEAYNAFVEG GWVGLSGDPE YGGMGMPKML GVLVDEMGYS
ACNAFNLYGS LTAGAALAIN AHGTEELKST YLPKLYSGEW AGAMDMTEPQ AGSDLRHIRT
RAEPQEDGSY LITGSKIFIT GGDQDLTENV IHLVLAKISG SNTLSLFLVP KIGVDDQGNL
TEPNGVSVGS IEHKMGLKGS ATCVMNFDSA RGWLIGRENK GLACMFTMMN YERLAIGIQG
LGSAQAAVQM ASDYARERLQ GNAVGSTAAA DPILVHGDVR RMLLTTRTLT DAGRALAVHT
GKQLDLAKFA DDDAVKTKAG RYVGLLTPVA KAFLTDRGLD ITIMAQQVFG GHGYIRETGI
EQLVRDTRIA QIYEGTNGIQ AIDFLGRKVT GDNLATVKEF IAEHIEVLSD TCDKANSLRV
GFADFVAVAT WINDNKLSRP ALINSVAVEM LDAFGYLLYG YYHLLMRDAA RAADSEFAAA
KAAYCDYYFA KLMPRADALL RAAKAGDELL MSLPETCF
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