| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1736 |
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| Symbol | rpsA |
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| ID | 4603986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2126185 |
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| End bp | 2127852 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781099 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_927611 |
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| Protein GI | 119774871 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000968358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000799802 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTGTTTGAA CAATCCCTTC AACAACTGGA ATTCCGTCCA
GGTTCTATCG TTCGTGGTAC TGTAGTTGCG ATCGAAAACG GCCTGGTACT GGTTGACGCC
GGTCTGAAGT CTGAGAGCCC AATCCCTGCC GAGCAGTTCA AGAATGCCCA AGGTGTTCTG
GAAATCGCCG TTGGCGACCA GGTAGACGTA GCTCTGGACT CTGTAGAAGA CGGTTTCGGT
GAGACTCAAC TGTCTCGCGA AAAGGCCAAG CGCCATGAAG CCTGGATCGT TCTGGAAAAA
GCTTACGAAG ATGCTGAGAC CGTTATCGGT ATCATCAATG GCAAGGTTAA AGGCGGTTTC
ACCGTTGAAC TGAACGGTAT CCGTGCGTTC CTGCCAGGCT CTCTGGTTGA CGTTCGCCCT
GTGCGCGACA CTGCTCACCT GGAAAACAAA GAGCTGGAAT TCAAAGTTAT CAAGCTGGAC
CAGAAGCGCA ACAACGTTGT TGTTTCACGT CGTGCAGTTA TCGAGTCTGA GAGCAGCGCC
GAGCGCGACG CTCTGCTGGA GAACCTGCAA GAAGGTCAAG CCGTTAAAGG TATCGTTAAG
AACCTCACTG ACTACGGTGC ATTCGTTGAC CTGGGCGGCG TAGACGGCCT GCTGCACATC
ACTGACATGG CTTGGAAGCG CGTTAAGCAC CCATCTGAGA TCGTGAACGT TGGTGATGAA
ATCAATGTGA AAGTTCTGAA GTACGATCGT GAGCGTACTC GCGTTTCTCT GGGTCTGAAG
CAACTGGGTG AAGACCCATG GCTGGAAATC AGCAAGCGCT ACCCAGAAAA CACTCGTCTG
ACCGGTCGCG TAACCAACCT GACTGACTAC GGCTGCTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTCTGG TACACGTTTC TGAAATGGAT TGGACCAACA AGAACATCCA CCCATCCAAG
GTTGTTAACC TGGGTGACGA AGTTGAAGTT CTGGTTCTGG ACATCGATGA AGAGCGTCGT
CGTATTTCTC TGGGTCTCAA GCAGTGCAAG ACCAACCCAT GGGAAGACTT CGCCAACCGT
TACAACAAGG GCGACAAGGT TTCCGGTAAG ATCAAGTCTA TCACTGACTT CGGTATCTTC
ATCGGTCTGG ACGGCGGTAT CGACGGTCTG GTTCACCTGT CTGACATTTC TTGGAATGCC
ACCGGTGAAG AAGCCGTTAG CGAGTACAAG AAAGGCGACG AAATCGAAGC CGTTGTACTG
TCTGTTGACC CAGAGCGTGA GCGTATCAGC CTGGGTGTGA AGCAGACTGA AGACGATCCA
TTCAACGGCT ACGTTGGCGA CAAGAAGAAA GGTGCCATCG TTAACGGTAC CGTGACTGCT
GTTGACGCCA AAGGCGTAAC CGTTGAGCTG GCTGAAGGCG TTGAAGGCTA CATCCGTGTT
GCTGACATCA GCCGTGAGCG CGTAGAAGAC GCTTCTACCG TGTTCTCAGT AGGTGATGCC
GTTGAAGCCA AGTTCATGGG CGTAGATCGC AAGAACCGCA ACGTGAGCCT GTCTATCCGT
GCGAAAGACG AAGCTGACGA AAAAGAAGTT ATGGCAAACT TGAACAAGCA AGAAGACGCT
GTTATTAGTA ATGCTATGGC CGAAGCGTTC AAGGCCGCTC GTAAGTAA
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| Protein sequence | MTESFADLFE QSLQQLEFRP GSIVRGTVVA IENGLVLVDA GLKSESPIPA EQFKNAQGVL
EIAVGDQVDV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG IINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLENK ELEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQAVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPENTRL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK TNPWEDFANR
YNKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNA TGEEAVSEYK KGDEIEAVVL
SVDPERERIS LGVKQTEDDP FNGYVGDKKK GAIVNGTVTA VDAKGVTVEL AEGVEGYIRV
ADISRERVED ASTVFSVGDA VEAKFMGVDR KNRNVSLSIR AKDEADEKEV MANLNKQEDA
VISNAMAEAF KAARK
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