| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1729 |
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| Symbol | |
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| ID | 4603979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2116488 |
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| End bp | 2117129 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781092 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_927604 |
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| Protein GI | 119774864 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.970974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00217318 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCGGAG TGTTGTTTGA CCTGGATGGT ACCCTGGTAG ATACAGCTCC TGATTTAGTG
GCGGCACTCA ACCTCGCTCT GGCGGATTTT GGCTTCTCAA GGGCGGATCT GGACAGTATG
CGCCCCGTTG CTTCCCATGG CAGCCTTGCC TTGGTAAAAG CCGCTAAGCC AGATCTTGAT
GAGGATGTGG CCATACAGAT CCAGCAGGCG CTTTTAGCGC ACTACGGCAA GGTGAATGGC
ACCGAAGCGA AGCTCTTTCC CGGTATAAAT CTGTTACTTG AACATTTAGA GAGCAGGCAC
ATCCCCTGGG GCATAGTCAC CAATAAAGCA GCCCGCTATG CAAGACCGCT ATTGGACAGA
CTCGGTCTGG CACATCAGTG CTCCACGCTT ATCAGTGGCG ATACGGTCAC CCGTGGGAAA
CCCGATGCAG CTCCCATGTT ACTTGGCGCG TCACATCTTG GCCGGCATAC TGAACACCTC
TTATATCTTG GGGATGCAAA ACGTGACATG GAAGCGGCCC GTAATGCCGG CATGGTTTCA
GTGCTGGCTT CCTGGGGTTA TCTTTCATCA CTCGATGAAG CCCATGATTG GCCAATCGAT
ATACATTTGA AGCGACCTCA GGATTTGATT GCTCACCTTT AA
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| Protein sequence | MGGVLFDLDG TLVDTAPDLV AALNLALADF GFSRADLDSM RPVASHGSLA LVKAAKPDLD
EDVAIQIQQA LLAHYGKVNG TEAKLFPGIN LLLEHLESRH IPWGIVTNKA ARYARPLLDR
LGLAHQCSTL ISGDTVTRGK PDAAPMLLGA SHLGRHTEHL LYLGDAKRDM EAARNAGMVS
VLASWGYLSS LDEAHDWPID IHLKRPQDLI AHL
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