| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1719 |
|---|
| Symbol | |
|---|
| ID | 4603969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2104525 |
|---|
| End bp | 2105652 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639781082 |
|---|
| Product | zinc carboxypeptidase domain-containing protein |
|---|
| Protein accession | YP_927594 |
|---|
| Protein GI | 119774854 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2866] Predicted carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.127578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0560142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATCA GCGCCAATTT TGACGGTGGC AACATTCAGG TTGTCAGCCT TGACGATCAT
AACGACATTC AACTGGCGAT TCGTCCAGAC GAAGGTGGCG AGTTCTATCA GTGGTTTAAC
TTTCGGATGG AAGGCGAAGT CGGAAATCAT TTCCGTCTGA ATATCATTAA CGCCGCTGCG
GCATCCTATC CGAAAGGTTG GGACGAGTAT CAGGCAGTGG GCAGCTACGA TCGCCAGAAT
TGGTTCCGTT TACCCACGCA ATTTCAGGAT GGCAAACTCA CCATTGATGT CTCCCTGGAT
TGCAGCAGTA TCCAAATTGC CTATTTCGCC CCATACAGCT ACGAACGTCA TTTAGATTTA
CTCGCCGCAG TGCAAATGCA TCCTTTGGTC GACCTTGAAC ATCTGGGGCT TACTCTGGAT
GGTCGTGACA TGACCCTGGT TAAAGTGGGT GATGGCGACA GCAACAAGCG CAATATCTGG
ATCACCGCCC GTCAACATCC CGGTGAAACC ATGGCAGAGT GGTTGGTGGA AGGCTTGCTA
AACCGCTTGC TCGACCGTGA AAACGCCACC GCCAAGGCGC TGCTGGATAA AGCCAACTTT
TACATTGTCC CCAATATGAA CCCTGATGGC AGCGTGCGTG GCCATCTGCG TACCAATGCC
AAAGGCGTAA ACCTGAACCG TGAATGGCAA GCCCCATCCC TTGAGCGCAG CCCTGAAGTT
TTTTATGTGG TTAATCGCAT GAAAGAAACC GGCGTTGACC TTTTCTATGA CGTCCACGGT
GATGAAGGTT TGCCCTATGT CTTTGTAGCT GGCGCAGAAG GCGTACCTTG CTGGGATGCT
CGTCTGGCCG ATTTGCAACA GCAATTCACC GATGTGCTGA GCCTTGCCAG TGCCGATTTC
CAAACTGAAT TTGGTTATGC CAAAGATGCG CCGGGCAAAG CCAATCTGAC GGTGGCGTCC
AACTGGGTAG CCCAGACATT CAATTGCCTG TCCAACACCC TGGAAATGCC GTTTAAAGAC
AACGCCAATC TTCAGGATCC CTTTGTGGGT TGGTCCCCTG AACGCAGTCA GCAATTGGGT
GAGGCGTCAC TCATAGCCAT GCTGGCGGTT GTAGACAAGC TGAGATAA
|
|---|
| Protein sequence | MRISANFDGG NIQVVSLDDH NDIQLAIRPD EGGEFYQWFN FRMEGEVGNH FRLNIINAAA
ASYPKGWDEY QAVGSYDRQN WFRLPTQFQD GKLTIDVSLD CSSIQIAYFA PYSYERHLDL
LAAVQMHPLV DLEHLGLTLD GRDMTLVKVG DGDSNKRNIW ITARQHPGET MAEWLVEGLL
NRLLDRENAT AKALLDKANF YIVPNMNPDG SVRGHLRTNA KGVNLNREWQ APSLERSPEV
FYVVNRMKET GVDLFYDVHG DEGLPYVFVA GAEGVPCWDA RLADLQQQFT DVLSLASADF
QTEFGYAKDA PGKANLTVAS NWVAQTFNCL SNTLEMPFKD NANLQDPFVG WSPERSQQLG
EASLIAMLAV VDKLR
|
|---|
| |