| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1704 |
|---|
| Symbol | |
|---|
| ID | 4603955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2083379 |
|---|
| End bp | 2084167 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781067 |
|---|
| Product | alpha/beta fold family hydrolase |
|---|
| Protein accession | YP_927580 |
|---|
| Protein GI | 119774840 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000659233 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0248748 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCGC AGCTTAACTA TCAGACCCAG GGTGTAGGGG AAGACGTGGT TCTGGTTCAC
GGTCTTTTTG GCGATCTGGA TAATCTAAAG GGACTGGCGC AGACCCTGGA GAGCGAATAT
CGCGTTACTC GTATCGATGT GCCCAATCAC GGTCAGAGTC CCCACTGGGA TACGATGGAT
TACCCAAGCC TGGCCCAGAG TCTGGTTTCA TTGCTGGATG AACTGGGCGC AACCAAAGCA
CATCTCATTG GTCATTCCAT GGGCGGTAAA ATTGTGCTCG CAACGGCGCT TCTGCATCCT
GACAGAGTCG CGTCCGTGGT TGCCGCCGAT ATCGCGCCCG TACCCTATGC CCCCCGTCAT
CAACGAGTGT TTGCTGCCCT CACCTCGCTG CCCCTTGATG GCAGCGTCGA GCGGAAAGAG
GCCTTGAATC ACCTTTTGGC AAGGGGTGTG GATGAGGCGA CAGCACAGTT TTTGCTGAAA
AGCTTTCGCC GGGCGGAGTC TGGTTTCAGT TGGCGGATGA ATCTGGACGG CCTGATAGCC
TCCTATGAGG GCATTATCGG TTGGCCATTC AATAACGGCG CTTATGATGG TCCGACACTC
TTTATTCGCG GTGATGAGTC AGACTATGTC ACCGCTGAAC ATAAAGACGC CATCCTCAGC
CAGTTTCCGA ATGTGCAGCT TAAGTCCATT GGTGGAGCCG GTCACTGGTT ACACGCACAG
AAGCCCGGCA TCTTTAACCG ACTGGTGAAA AATTTTCTGG ACAGCCAACA CCCTGAGTTA
CACGGGTAA
|
|---|
| Protein sequence | MSAQLNYQTQ GVGEDVVLVH GLFGDLDNLK GLAQTLESEY RVTRIDVPNH GQSPHWDTMD
YPSLAQSLVS LLDELGATKA HLIGHSMGGK IVLATALLHP DRVASVVAAD IAPVPYAPRH
QRVFAALTSL PLDGSVERKE ALNHLLARGV DEATAQFLLK SFRRAESGFS WRMNLDGLIA
SYEGIIGWPF NNGAYDGPTL FIRGDESDYV TAEHKDAILS QFPNVQLKSI GGAGHWLHAQ
KPGIFNRLVK NFLDSQHPEL HG
|
|---|
| |