Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1700 |
Symbol | |
ID | 4603951 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2080955 |
End bp | 2082121 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639781063 |
Product | hypothetical protein |
Protein accession | YP_927576 |
Protein GI | 119774836 |
COG category | [S] Function unknown |
COG ID | [COG4394] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000144386 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0296487 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCAGTC CTAAATCCAG CCACTGGGAC ATCTTTTGTG CCGTTGTCGA TAACTACGGT GATATTGGCG TTACCTGGCG CCTCTCAAAA CAATTGGCAC GGGAATATCA GCTGCCCATA GTGCTTTGGG TGGATGACCT CAAAAGCTTT GCGCATATAT TGCCCACGCT TAACCCAACC CTTGGCTCGC AAACCCTCGA AGGCGTCACC ATCAATCAGT GGAATATGCC GCTGAACATC GATTACACCC CAGGCGCCGT GCTGATTGAA GCCTTCGCCT GTGAATTACC TGACGAGGTC AAGGCCATAG CAAAATGCGC GCCCACACCA CCGCTTTGGC TCAATCTTGA GTACCTGAGC GCAGAAGACT GGGTCGACGG TTGCCATGGG CTGCCCTCAT TACAAAGCGG CGGCATCAAC AAATACTTTT ATATGCCCGG TTTTTCTGCC GCGAGCGGTG GTCTGATTTG CGAAAAGTCT CTCTTTGATG AAAGGGATGC CTGGCAGGCC GACAGTGCCA ACAAGCTCAC TCTTTTTAGA AGCCTGGGGC TGAGTGGCAT CAAAGCGGAT GACAAGATCG TCAGTCTCTT CAGCTATGAA ACCCTGGCAC TGGAGGGCCT CTGTGCCCGT TGGCAAGCCT CATCGAGCCC AGTGCATCTG CTGGTGCCCA AGGGACGCAG CCTGAACAGT TTGGCATCGT ATCTGCCCAA AGCCCCTGCC GATATCGCAG CTGGTGAGCA GTTTTGTCAG GGTGCTCTTA CCATCCACAT ACTGCCGATG ACAGATCAAA CCGGCTATGA TCGCCTGCTT TGGAGCGCCG ATTTTAACAT CATACGGGGC GAAGACTCCT TTTTACGGGC ACAATGGGCG GGCCGTCCCT TTATTTGGCA CATTTACCAG CAGGAAGAAG ACTACCACCT GGTAAAATTA GAAGCTTTTA TGCGCCTTTA CTGCGATAAT CTGGCACCTG AGATTGCAGA TTGCTGGAAA AACTTGAACC TTGCGTTCAA TCAGCAACAG GCGGATGCCG TGCAGCAGCA CTGGCAAAAT ATCGAATCTT TCGCTTTGCC TTTGTTGGCA CACGCCAAAC AATGGCCAAT CGATGCACTT AAGACGACAG ATCTGGCAAC CAGGCTAGTG CAATTCGTCA AAAAATCGTT AAGATAG
|
Protein sequence | MTSPKSSHWD IFCAVVDNYG DIGVTWRLSK QLAREYQLPI VLWVDDLKSF AHILPTLNPT LGSQTLEGVT INQWNMPLNI DYTPGAVLIE AFACELPDEV KAIAKCAPTP PLWLNLEYLS AEDWVDGCHG LPSLQSGGIN KYFYMPGFSA ASGGLICEKS LFDERDAWQA DSANKLTLFR SLGLSGIKAD DKIVSLFSYE TLALEGLCAR WQASSSPVHL LVPKGRSLNS LASYLPKAPA DIAAGEQFCQ GALTIHILPM TDQTGYDRLL WSADFNIIRG EDSFLRAQWA GRPFIWHIYQ QEEDYHLVKL EAFMRLYCDN LAPEIADCWK NLNLAFNQQQ ADAVQQHWQN IESFALPLLA HAKQWPIDAL KTTDLATRLV QFVKKSLR
|
| |