| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1693 |
|---|
| Symbol | |
|---|
| ID | 4603944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2070919 |
|---|
| End bp | 2073522 |
|---|
| Gene Length | 2604 bp |
|---|
| Protein Length | 867 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781056 |
|---|
| Product | bifunctional acetaldehyde-CoA/alcohol dehydrogenase |
|---|
| Protein accession | YP_927569 |
|---|
| Protein GI | 119774829 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases
[COG1454] Alcohol dehydrogenase, class IV |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0842725 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTCA CCAACACTCA GGAACTCAAC GAACTGGTCG CGCGCGTCGC CAAGGCACAG
GCCCAATTTG CTTCTTACAG CCAAGAGCAA GTGGACAGGA TTTTCCGCGC CGCCGCCCTC
GCCGCTGCTG ATGCACGCAT TCGTCTGGCC AAAATGGCCG CTGAAGAAAC CCGCATGGGG
GTTGTTGAAG ATAAGGTCAT TAAAAACCAT TTCGCCTCCG AGTACATTTA CAACAAATAC
AAAGACGAAA AGACCTGCGG CATTCTGGCC GAAGACGCCA CCTTCGGCAC TATCACCATC
GCCGAGCCGG TTGGGATCAT CTGCGGCATT GTGCCCACCA CCAACCCGAC CTCCACCGCT
ATCTTTAAAG CGCTGATAAG CTTAAAGACC CGCAACGGCA TTATCTTCTC GCCTCACCCA
AGGGCCAAGG TTTCAACTAC CACTGCCGCC CGCATCGTAC TGGATGCAGC CATTGCAGCA
GGTGCCCCGA AAGACATTAT TGGCTGGATT GATGAGCCTT CGGTGGCGCT GTCCAACCAG
TTGATGACCC ACGAGAAGAT TAACCTTATT CTCGCCACCG GCGGCCCCGG CATGGTGAAA
GCGGCCTACT CCTCCGGCAA ACCCGCGATT GGCGTTGGCG CCGGCAACAC CCCCATCGTG
ATTGATGAGA CCGCTGACAT CAAACGTGCT GTAAGCTCAA TTTTGATGTC CAAGACCTTC
GATAACGGCG TGGTGTGTGC CTCCGAGCAA GCGGTTGTGG TGGTGGATGC GGTTTACGAT
GCGGTAAAAG AGCGCTTCTC GAGCCACGGC GGCTATCTGC TCAGCAAGAA AGAAAACGCC
GCGCTGCAAA AAGTCATCCT CAAAGACGGT GGCCTCAATG CCGATATCGT GGGTCAAAGC
GCCGCCACCA TTGCCGCCAT GGCCAATATC AAGGTGCCTG CCCACACCAA GGTGCTGATT
GGTGAAGTCA CCGACATCGA TGAGAAAGAG GCCTTCGCCC ACGAGAAACT CTCACCGCTG
CTTGGCATGT ACCGCGCCGC CAACTTTGAA GAGGCGCTGG ACAAGGCCGA AGCCCTGGTT
GCTCTTGGCG GTATTGGTCA CACCTCAGGC CTGTATACCG ATCAGGATAC CCAGGACGAG
CGGGTCAAAT CCTTCGGCTA CCGGATGAAG ACCGCCCGTA TTCTGATTAA CACCCCGGCC
TCTCAGGGCG GCATAGGCGA TTTATACAAC TTCAAGCTGG CGCCTTCATT GACTCTGGGC
TGCGGCTCCT GGGGCGGTAA CTCGATTTCT GAAAACGTAG GTCCAAGCCA TCTTATCAAC
AAGAAAACCG TCGCCAAGAG GGCCGAAAAT ATGCTGTGGC ACAAGCTTCC TTCGTCCATC
TACTTCCGCC GTGGCAGCCT GCCGATTGCC CTCGAAGAGC TGAGTGGCAA GAAGCGTGCG
CTTATCGTGA CCGACAAGTT TCTGTTCAAC AACGGCTATT GCGATGAAAC CATCCGAATT
CTGAAGTCAC AGGGCCTGGA AACCGAGGTC TTTTACGAAG TGGAAGCCGA CCCAACCTTA
GCGGTGGTTC GCGCCGGAGC CAAAGTGGCA ACCAGCTTCC AACCTGATGT GATAGTGGCT
CTGGGTGGTG GTTCGCCCAT GGATGCGGCC AAGATCATTT GGGTAATGTA CGAGCATCCC
GATGTGGACT TTGCCGACCT GGCGCTGCGC TTTATGGATA TCCGTAAGCG TATCTACAAG
TTCCCCAAAC TTGGTGCCAA GGCAATGATG GTGGCCATTC CCACCACCTC AGGTACTGGC
TCTGAAGTCA CGCCTTTTGC GGTGGTGACC GACGAGCAAA CCGGTGCCAA ATACCCCATT
GCCGACTATG AACTGACCCC CAACATGGCC ATTGTCGACC CCAATCTGGT AATGGATATG
CCCAAGTCGC TCACCGCTTT CGGCGGTATC GATGCCATTA CCCACGCACT GGAAGCCTAT
GTCAGCGTGA TGGCCAACGA ATACAGCGAC GGCCAGGCAC TGCAGGCACT GGATTTACTG
TTTAAGTATC TGCCAGACAG CTACGCCAGG GGCGCGCAGG CGCCGCTGGC ACGGGAAAAA
GTGCACAATG GCGCCACCAT TGCCGGTATC GCTTTTGCCA ACGCCTTCTT AGGCATTTGC
CACTCAATGG CTCACAAATT GGGCGCTGAG TTTCACCTGC CCCATGGCCT TGCCAATGCG
CTCCTTATCA GCAACGTCAT TCGCTTCAAT GCCACTGACC TGCCCACCAA ACAGGCGGCG
TTCAGCCAGT ACGACAGACC CAAGGCCCTG TGCCGTTATG CCGCCATTGC CAGCCACTTA
GGCCTTGCCG GCAACAATGA TGAAGCCAAG GTAGAGGCGC TTATCGCCAA GATTGAGGAG
CTTAAAGCCG CCATCGGTAT TCCGGTGTCT ATCAAGGACG CAGGGGTAAA TGAAGCCGAC
TTTATGGCCA AGCTTGATGA GTTGGCCGAA GATGCCTTTG ACGATCAGTG CACCGGCGCC
AACCCGCGCT ACCCACTGAT TAGCGAGCTG AAACAGCTGC TTATCGATAG CTTCCATGGA
CGTGCCTATC AGGACAGTCT CTGA
|
|---|
| Protein sequence | MTVTNTQELN ELVARVAKAQ AQFASYSQEQ VDRIFRAAAL AAADARIRLA KMAAEETRMG
VVEDKVIKNH FASEYIYNKY KDEKTCGILA EDATFGTITI AEPVGIICGI VPTTNPTSTA
IFKALISLKT RNGIIFSPHP RAKVSTTTAA RIVLDAAIAA GAPKDIIGWI DEPSVALSNQ
LMTHEKINLI LATGGPGMVK AAYSSGKPAI GVGAGNTPIV IDETADIKRA VSSILMSKTF
DNGVVCASEQ AVVVVDAVYD AVKERFSSHG GYLLSKKENA ALQKVILKDG GLNADIVGQS
AATIAAMANI KVPAHTKVLI GEVTDIDEKE AFAHEKLSPL LGMYRAANFE EALDKAEALV
ALGGIGHTSG LYTDQDTQDE RVKSFGYRMK TARILINTPA SQGGIGDLYN FKLAPSLTLG
CGSWGGNSIS ENVGPSHLIN KKTVAKRAEN MLWHKLPSSI YFRRGSLPIA LEELSGKKRA
LIVTDKFLFN NGYCDETIRI LKSQGLETEV FYEVEADPTL AVVRAGAKVA TSFQPDVIVA
LGGGSPMDAA KIIWVMYEHP DVDFADLALR FMDIRKRIYK FPKLGAKAMM VAIPTTSGTG
SEVTPFAVVT DEQTGAKYPI ADYELTPNMA IVDPNLVMDM PKSLTAFGGI DAITHALEAY
VSVMANEYSD GQALQALDLL FKYLPDSYAR GAQAPLAREK VHNGATIAGI AFANAFLGIC
HSMAHKLGAE FHLPHGLANA LLISNVIRFN ATDLPTKQAA FSQYDRPKAL CRYAAIASHL
GLAGNNDEAK VEALIAKIEE LKAAIGIPVS IKDAGVNEAD FMAKLDELAE DAFDDQCTGA
NPRYPLISEL KQLLIDSFHG RAYQDSL
|
|---|
| |