| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1679 |
|---|
| Symbol | |
|---|
| ID | 4603930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2053436 |
|---|
| End bp | 2054572 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639781042 |
|---|
| Product | hydrogen:quinone oxidoreductase |
|---|
| Protein accession | YP_927555 |
|---|
| Protein GI | 119774815 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.915972 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACAC ATGCAGCCCT CTACGAGCAA GGAAAGCAGC GACTTGAAAC GCTGCGTTCC
CTGCCAAGGC GCCATGAGGA GACCATCTTT GACAAGATGG CTCAACATGG CATTACCCGT
CGTGATTTTA TGAAGTGGAG CGCCTCGGTT ACCGCCATGC TGGCGCTGCC GTTGCCCTTC
TCTACCCTGG TGGCCGAAGC GGCCGAACTG GCAGACCGCG TGCCACTGAT TTGGCTGCAC
ATGGCCGAAT GTACCGGCTG CTCTGAGTCG CTGGTACGCG CCGACACGCC AAATCTCGAC
TCCCTAATCT TCGACCATAT CAGCCTCGAA TACCACGAGA CTCTGATGGC CGCTGCCGGT
TGGCAAGCCG AGGAAAACCT CGAACACGCC CTGGAAACCT ACAAAGGCAA TTATCTGCTG
GCAGTGGAAG GCGCCGTCCC CACCGCCAAT AACGGTGCTT TCCTGACCGT GGGTTGTAAA
GGTCACACCG GGCTTGAAAT CATCAAGCAT GCGGCCGATG GCGCGGCAGC CATTGTATCC
GTGGGTACCT GCGCCTCCTT CGGCGGCGTT CAGGCTGCCT ACCCCAACCC CACCGGGGCC
AAAGGGGTAC ACGAAGTTGT CAGCAAGCCT GTGATTAACC TGGGCGGCTG TCCACCGAGT
GAGAAAAATA TTGTTGGCAC CCTGATGTAT TTCATCATGT TCGGCAAGCT GCCGGCACTG
GATATGTTTA ATCGTCCCAA GTGGGCCTAT GGCGCCCGGG TACACGATAA CTGTGAACGT
CGTGGCCGCT TTGATGCCGG TGAGTTTGTT GAAGAGTTTG GCGATCACGG CGCCAAAGAA
GGCTACTGCC TCTACAAGGT TGGCTGTAAA GGCCCTTACA CCTACAACAA CTGCCCCACA
GAACGCTTCA ATCATCATAC CAGCTGGCCG GTACTCGCGG GCCACGGCTG TATGGGCTGC
TCTGAGCCAA ACTTCTGGGA CGACATGGCC GACTTTGAGA AGCCACTTGG CCGGCAACTG
CTGCACGGGC TTGATGCCAC GGCCGACACC ATAGGCGCCG TCATTCTCGG TGCCACTGTT
GTCGGTATCG GCGCCCATGC CGTTGCCAGT GTATTTGCGC AAGCCAAAGA GGACTAA
|
|---|
| Protein sequence | MDTHAALYEQ GKQRLETLRS LPRRHEETIF DKMAQHGITR RDFMKWSASV TAMLALPLPF
STLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAAAG
WQAEENLEHA LETYKGNYLL AVEGAVPTAN NGAFLTVGCK GHTGLEIIKH AADGAAAIVS
VGTCASFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL
DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT
ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT IGAVILGATV
VGIGAHAVAS VFAQAKED
|
|---|
| |