| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1671 |
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| Symbol | |
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| ID | 4603922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2043872 |
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| End bp | 2045032 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639781034 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_927547 |
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| Protein GI | 119774807 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAATC AAGCCATCAA TGAACCTGAT TCATCACTAA AACTGAAGTC CCTTTATGAA
GGGTTTCGTG ATGCAGGGAC CATTCGGGCG CTGGCCGCAC GGATAAACAG CGCGGCCCAA
AATCTCTCTG AGCCGCTGTA CATCATGGAG GTGTGCGGTG GCCATACCCA CACCATCATG
AAATACGGCC TGCTCGGCCT GATACCGGAC AATGTGAAAT TTATCCATGG TCCCGGCTGC
CCTGTTTGTG TGATGCCCAA AGAACGCATC GATCAGGCCA TCGCCCTGGC TAAGATGGAC
GATGTCATAC TGCTGACCCT GGGCGACATG ATCAGAGTCC CCGGCTCAAA AGGCAGCCTG
GCACAGGCCA GAGCCAGTGG CGCTGATGTG CGCCCCCTGT ACGATCCCCT GGATGCGCTT
GCCATCGCCA GAGACAATCC CGACAAGACA GTGGTGTTTT TCGCCATTGG TTTTGAAACC
TCCACTCCCA TGACCGCAGT GCTGCTTCAG CAAGCCGAGC ACGCCGCCCT GCCCAACCTG
CTGTTTCATA TCAATCATGT GCTGGTGCCC CCTGCCATCG ATGCGGTGAT GGCCGAGCCT
GCCACCAAGG TGAATGCCTT TATCGGCCCT GCCCATGTGA GCGTGATAAG TGGCGCCAAA
ATCTATCGCC GGGCGGCAGA CGTGCACCAT ACCCCTGTGG TGGTCAGCGG TTTTGAACCC
GTGGATGTGA TGGAATCCAT TTTGCGATTG GTGGAGCTTA AAAATCTCAC CGAATCCGTG
GTTGACGTGC AGTACAGCCG CGCGGTGTCT GAGGAAGGTA ACCTGACCGC CCAGGCGTTG
GTGGACGAGT ACTTTGAAGT GCGTGACAGC TTCCGCTGGC GCGGTCTGGG GCCCATTCCC
CAGTCAGCCC TGAAACTCAA AGGCAAGTAC GCCCACAGGG ATGCCGAAAT CCATTTTGGC
GGGCGTTTAC CCGTTCAGGA AATCGACGAT CACAAGGCCT GCCAGTGTGG TGACATTCTG
CGTGGTCTTG CCAACCCCAT GGACTGCAAA GTCTTTGGCC GTGGCTGCAC GCCCCAAACG
CCCCTTGGCA GTTGCATGGT CAGCTCAGAA GGCGCCTGCA ATGCCTATTA CCGCTACCAT
GGAGTCCAGC ATGTCGACTA A
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| Protein sequence | MPNQAINEPD SSLKLKSLYE GFRDAGTIRA LAARINSAAQ NLSEPLYIME VCGGHTHTIM
KYGLLGLIPD NVKFIHGPGC PVCVMPKERI DQAIALAKMD DVILLTLGDM IRVPGSKGSL
AQARASGADV RPLYDPLDAL AIARDNPDKT VVFFAIGFET STPMTAVLLQ QAEHAALPNL
LFHINHVLVP PAIDAVMAEP ATKVNAFIGP AHVSVISGAK IYRRAADVHH TPVVVSGFEP
VDVMESILRL VELKNLTESV VDVQYSRAVS EEGNLTAQAL VDEYFEVRDS FRWRGLGPIP
QSALKLKGKY AHRDAEIHFG GRLPVQEIDD HKACQCGDIL RGLANPMDCK VFGRGCTPQT
PLGSCMVSSE GACNAYYRYH GVQHVD
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