| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1668 |
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| Symbol | |
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| ID | 4603919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2041211 |
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| End bp | 2042281 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781031 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_927544 |
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| Protein GI | 119774804 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAACTGG TCTGGCAGGT TCCCAAACGC GCAGCGCTGC TGTTTCATCT CGTGGCCATG
GCAACCCTGG TGCTTTACTG CGCCTATCGT GTGTCCCTCG GACACTGGCC CATGGTGTTT
ATTTACGGCC TGTCACTCAT CCCACTCACC CTGTCATTTG TAAAAGAACT CCGTGGTCAG
GCAAGCCCGG TGAACCGTAT GGTAACCCTG CTGTTGGTGT CCATTGGTAT CGCAGCCACC
TGCCTTGAAA TTGGCTACGC CGGGATGATT TTTATCTTTC CCGCCATCTT CATTTATTTT
TTTCTGTTTA ATATCCGGGC AGCGCTGATG CTCTCGAGTG CATTTACCGC GCTGTGCCTC
ATCTGCGGCG CGCAGGTCGA GGCTAACGAT GTGATAGCCC GCTTCGCCGT CGCCTCGGTC
AATTGCATCA TTTTTGGCGC AGTTTTCGCT TTCATCCTTG CGAAACAGCA CGACTCTTTG
GTGCAAATCG CCCAGCGCGA TCCTCTTACG GGTTTGTTTA ATCGAAGCAA ACTGGAGTTG
GATCTGGCTG CGCTCGCCCC GGCAACTCAG GCCATACTCA TGCTGCTGGA TGTAGACCAT
TTTAAAAGGA TCAACGATGT ACATGGTCAT CAGATGGGTG ATAAGGTGCT GACATCGTTG
GGAAAGCTAT TGGATGCCCT GCTGCCGGAT GTGGCGACCG CCTACCGCTT TGGTGGTGAA
GAGTTTCTGG TGCTGTTTAA CCTGACAGAA CCCTCTGCAT TCAATGAGAC TGCGCTCAAT
CTTGCCAAGA CAACCGCCGG GCGGTTTCAG GCGGCATTGC GCTGTGTCGA TGTGGTGCCC
GGCAGCACCA TTACCTGTTC CATCGGTATC GCCCAGCGGA TCGCGGGCGA ACATATTCCG
CCCTGGTTTG ACCGGGCAGA TGCTGCCCTG TATCGCGCCA AGCGTTCAGG ACGAGATCAG
GTGTGTGTAT TCGAAGAGAC TTTTGACGCC GAAGACATCC CCATAAAAGA CACAGTAACC
GACTCAGATA CGGCGATAGA TGCCTTGGAT ACCGGGCTGG GTAACAAATA G
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| Protein sequence | MQLVWQVPKR AALLFHLVAM ATLVLYCAYR VSLGHWPMVF IYGLSLIPLT LSFVKELRGQ
ASPVNRMVTL LLVSIGIAAT CLEIGYAGMI FIFPAIFIYF FLFNIRAALM LSSAFTALCL
ICGAQVEAND VIARFAVASV NCIIFGAVFA FILAKQHDSL VQIAQRDPLT GLFNRSKLEL
DLAALAPATQ AILMLLDVDH FKRINDVHGH QMGDKVLTSL GKLLDALLPD VATAYRFGGE
EFLVLFNLTE PSAFNETALN LAKTTAGRFQ AALRCVDVVP GSTITCSIGI AQRIAGEHIP
PWFDRADAAL YRAKRSGRDQ VCVFEETFDA EDIPIKDTVT DSDTAIDALD TGLGNK
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