| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1662 |
|---|
| Symbol | |
|---|
| ID | 4603913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2033633 |
|---|
| End bp | 2035267 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639781025 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_927538 |
|---|
| Protein GI | 119774798 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.723863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.697753 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC ATCCCTGGTG GCGCGGCGCT GCCATCTATC AGATTTACCC GCGCAGTCTT
AAGGACAGTA ACGGCGATGG TATTGGCGAT CTGCAAGGGA TCATCGAGCG TCTGGACTAT
ATTGCCAGCC TCAATGTGGA TGCGATTTGG ATCTCGCCCT TCTTCCGCTC TCCCATGAAG
GACTTTGGTT ACGATATCAG TGACTATCTT GATGTGGACC CCATGTTTGG CACCATGGAC
GACTTTGATG AGCTTATTGC CAAGGCCCAT TCTCTGGGGT TGAAGGTGGT TATCGATCAG
GTACTCAGCC ACACTTCCGA CGAACATGCC TGGTTTGCCG AGAGCCGCCA GAGCCGCGAC
AATCCAAAGG CCGACTGGTA TGTGTGGGCC GATCCCCGAG AAGACGGTAC CCCTCCCAAC
AATTGGCTGG CGATATTCGG TGGCTGCGCC TGGGAATGGG AGCCAAGACG CCAGCAGTAT
TACCTGCACA ATTTTTTGAA GAGCCAGCCG GATCTTAACT TTCACTGTGA AGCCGTTCGT
CAGGCGGTGC TCAATAACGT AGAGTTCTGG CTCAAAAAGG GCGTGGATGG TTTCCGGCTC
GATGCCATTA CTTTTTGTTT CCACGATAAG GCGCTTCGTG ACAACCCGGC GAAACCGGCC
GATAAGCGCC AGGGCCGAGG TTTTTCTGAA GACAACCCCT ACGCCTATCA GTATCACTGG
TACAACAACG AACGTCCCGA AACCCTTGGT TTTATCGAAG ATTTAAGAGC GCTGATTGAT
CGCTACCCGG GTGCCGTGAC CCTCGGTGAA GTCTCAAGCG AAGACTCCCT TGCCACCATG
GCCGAATACA CCCGGGGCGA TAACCGCCTG CACATGGCCT ACAGCTTTGA GCTTTTAACC
AAGGACTACA GCGCTGGGTA TATCCGCAGC ACAGTTGAAG CACTCGAAGG TGCCATCGGT
GACGGCTGGC CGTGCTGGGC CATAGGCAAC CACGATGTGG AGCGGGTCAT CAGTCGATGG
GGGCAGGGTA AGGGCACACC TCAAATGGCC AAGATGCTGT CGGCCATGCT GGGATGCCTG
CGGGGCAGCC TGTGCGTGTA TCAGGGCGAA GAGTTGGGGC TTACCGAAGC CGACATCCCC
TTTGATGCGC TGCAGGACCC CTTTGGTATC GCATTCTGGC CTAACTTTAA AGGCCGCGAT
GGCTGTCGTA CCCCCATGCC CTGGCAAGCC GAAGGCGAAT ACATGGGATT CGGTGCGACA
GCCTCTGGTG CCATGCCCTG GTTACCGCTG CCAGAAGAAC ATCGTGCACT GAACGTTGCC
GCCCAGAGTG CGAACCCGGA CTCGGTGCTC AATCAGTTCA GCCGCTTTAT GGCATGGCGC
CGCACTCAGC CGGCTTTGGT AACTGGTGAA ATTAAATTTA TTGATAGCAA AGAGCCCGTT
CTGGCGTTTG AACGTGTGAG CTCTGATAAA AAAGTGCTTT GTGTGTTCAA TTTATCTGAT
AAGCCGCAAA CGATGACTGT TCCTGGCAGT GAGCCATGGA AGCTCCTTGA AGGCCATGGG
CTTGAAGGTG GTAGTCTGGA CGGCGCTGGC ACTGTTCGCC TTGCACCCCA CGGGGCTCTG
TTACTGGGCA ACTAA
|
|---|
| Protein sequence | MSIHPWWRGA AIYQIYPRSL KDSNGDGIGD LQGIIERLDY IASLNVDAIW ISPFFRSPMK
DFGYDISDYL DVDPMFGTMD DFDELIAKAH SLGLKVVIDQ VLSHTSDEHA WFAESRQSRD
NPKADWYVWA DPREDGTPPN NWLAIFGGCA WEWEPRRQQY YLHNFLKSQP DLNFHCEAVR
QAVLNNVEFW LKKGVDGFRL DAITFCFHDK ALRDNPAKPA DKRQGRGFSE DNPYAYQYHW
YNNERPETLG FIEDLRALID RYPGAVTLGE VSSEDSLATM AEYTRGDNRL HMAYSFELLT
KDYSAGYIRS TVEALEGAIG DGWPCWAIGN HDVERVISRW GQGKGTPQMA KMLSAMLGCL
RGSLCVYQGE ELGLTEADIP FDALQDPFGI AFWPNFKGRD GCRTPMPWQA EGEYMGFGAT
ASGAMPWLPL PEEHRALNVA AQSANPDSVL NQFSRFMAWR RTQPALVTGE IKFIDSKEPV
LAFERVSSDK KVLCVFNLSD KPQTMTVPGS EPWKLLEGHG LEGGSLDGAG TVRLAPHGAL
LLGN
|
|---|
| |