| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1661 |
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| Symbol | |
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| ID | 4603912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2030305 |
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| End bp | 2033127 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781024 |
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| Product | TonB dependent receptor-related protein |
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| Protein accession | YP_927537 |
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| Protein GI | 119774797 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.55964 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCAAT TTAAACCAAA CCTGCTGACC GTGGCGTTGC TCGCTGCCGG TTTCAGTATG
CAGGTACTGG CAGCCGAACC TTCTGAAGAA AAAGATGTAA ACAAAGAAGA CGCTGCCAAT
ATCGAAGTGA TCACCGTAAA GGGCTTTCGC ACCAGCGTGA TCAAGTCGCT CAACGAAAAA
CGTTTTGGCG ATACAGTCTC TGAATCCATC TCTGCCGACG ATTTGGGCGC CCTGCCCGAT
CAGTCCATCG CCGACGCCCT CACCCGCTTG CCCGGCATCA CTGCCGTGCG TACCGGCGGC
CAGGCCAGCG GCCTGAACAT TCGTGGTTTG GATGGTGACT TTGTGTTTGC CACCCTGAAT
GGCCGCGAGC AGGTCACCAC CGGCAGCAAG CGTGCTATCG AATTTGACCA GTATCCTTCT
GAGCTCATCA GCCAGGCCGC TGTTTACAAG TCACCCAAGG CATCCCTGAT TGAAGGTGGC
GTGGCCGGTA CCGTTGAGCT GAAAACAGCC GATCCACTGC GCGCTGCAAA AGAGCAAAAC
TTTACCTTTA ATGCCCGCGG TGCCTTTAAC GATCGCGCCG ATGAAGTTGC CGATGCCAAC
GAGTACGGCA ATCGCTTAAG CTTCTCTTAT CAGGGCAAGT TCCTGGAAGA AACCCTGGGT
GTTGCCCTGG GTTACGCGCA CCTGTACCAG CCTTTTGTTG CCAGCCAGTT TATCGGTTTG
CGCTTCAACG ATGCCAAGAA AGATGTCAAC GGTGATGGCG TGGTTGAGTC CATCAGCGAA
GGCTTTGAAA TGCAGCAAAA AGGTGGCGAA GACACCCGCG ACGGTTACAT GGCTGCCATT
CACTGGCGCC CCAATGATAA CTGGTCTTTC AAAGGTGATT TGTTCCACTC ACAGTTCGAT
TCAGAAAACT TTGCCCGCGG TTTCCGGGTG AAGTCACTGC AAAACGGCAC CATCACCAAC
GCCAACATTA AAAATGGCTC CATGATTGGC GGCACCGTGA GCACCGATGG CACAGATAAC
TTTGCCCTGT TTGTGGTGAA CGATAACGAC TCCAAGTATT CAGAGCTGAC CTCTGGCTCT
TTCAACGTAG AGTGGAACAA CGGCGATGCC CTGACCGTTT CAGCCGATAT CAGTTACTCC
AAGGCCGATG GCGAGTTTGT GAACGGTGGT ACCCGTGCCG TTGTGTATCA GGATATCGAC
AATGAAATCC GCGCCGCCGA GTCCATCAGC TATCAGCTGA ACGATCTGAA CCCAGCCTCC
ATCTCGGTCA CCAACGACTA CACCGACCTG AGTACCCTGG GCCTGAAAGA AGTGGGCATG
TGGCCCTACA ACCAGCAAAA CGATCTGATT GCGTACAAGC TGGACTTCAA CTATCAGCTG
GATACCGCTT TTGTCTCTTC AGTTGAGTTT GGTGTGCGTT ACTCTGAGCG CGAATTCAAC
GCCCAACGTT CACAGGCAGG TTACGGTTTC GAGTTTGGCC ACAATCCGGC CAACCAACCC
GTACTGCGTC TGACCGACGA CATGACCAGC GTGGTTAACT TTGGCGGTGA ACTCGCCGGT
TACCCAAGCT TCCTTGCCAT CGACTTCGAC AAGGCCGTTG ATCTGGTGAA TGCACAGCTT
GCTGCCACAG GTCAGGATCC TTTTGCCCCT ACCGCCAACT GGTCCAATAA CTGGACCATG
ATCCAAAGCG GTGCGGTAAA CGAAGATGTA CTCGCCGGTT ATGTGCAGGC CAATCTGGAG
TTTGATCTGG CCGACGTGAA AGTGACTGGT AATCTGGGCC TTCGCGTAGT GCATACCGAT
CAGTCCAGTA CCGGTCTGCA GCAGGTGGGC TTTGGTCTGG GTGAAGCCAT CACCGACGAA
AAAGGCGTGG TGAGCACAGA TTATATCCGC AACGAAGTGG GTAAGACTTA CACCGACTAC
CTGCCCTCAT TGAACCTGAA CTTCCACCTG ACCGATAACG ATCAGCTGCG TTTTGCCGCC
GCCTCCGTGA TGGCACGCCC GCCTATCGAT AAGCTGAAGT CAGGCATGGG CAGCTGGTAT
GACGATGCCG CCACTCCCGG CTACAAGAAG TACAACGCAT GGGGCAACAC CAGCCCACTG
CTGGATCCCT TCTACGCCGA TCAGTTTGAC CTGTCTTACG AGCACTACTT TGAAGACAGC
GAAGGCGCCG TGGTCGTAGC CCTGTTCTAC AAAGACATCA AGTCTTTCAT TAACAACTTC
ACCATACAGC CATTCGATTT CGAAGCAGCC GGTTTCCTGG TGCCCGATAC CATTATCGAC
AATGGTGTTG AGTTCCCGGT GGTGAAAGAC GAAGGCCAAT ACCAAACCGC CATCAACAAC
GACAAGGGTG GCTACATCCG CGGCGTTGAG CTGGCTTACA CCCAGGTATT TGACTTCCTG
CCCGATCCTT TGAGTGGTCT GGGCTTCACC GGCAGCTACT CTTACTCTGA CAGTGAAGTG
CAGTTCACCA CCGATTTGAG CGGCTCATCT CTGGATATTC CGCTGCCAGG TTTGTCTGAG
CACGTGGTTA ACACCACACT CTTCTACACC CTGGACGGTT TCGATACCCG TTTGAGCATG
CGTTATCGCA GTGGTTATGT GTCTGAGCAG GTTGCGGTTG AAACCCAGCT GGCCTTCTTC
GATGCCGAAA CCATCTTCGA CTATCAGGCG TCTTACGCTC TGGATAACGG CCTTAAGTTC
CTGTTCCAGA TCAATAACCT GACCGACGAG CCCAACAAGA CTTACTTCGG TGAGGAGTAT
CAGACAGGGA CCATCCAGTC CTTTGGTCGC CAGTACTTCC TGGGTATGAG CTACTCAATG
TAA
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| Protein sequence | MMQFKPNLLT VALLAAGFSM QVLAAEPSEE KDVNKEDAAN IEVITVKGFR TSVIKSLNEK
RFGDTVSESI SADDLGALPD QSIADALTRL PGITAVRTGG QASGLNIRGL DGDFVFATLN
GREQVTTGSK RAIEFDQYPS ELISQAAVYK SPKASLIEGG VAGTVELKTA DPLRAAKEQN
FTFNARGAFN DRADEVADAN EYGNRLSFSY QGKFLEETLG VALGYAHLYQ PFVASQFIGL
RFNDAKKDVN GDGVVESISE GFEMQQKGGE DTRDGYMAAI HWRPNDNWSF KGDLFHSQFD
SENFARGFRV KSLQNGTITN ANIKNGSMIG GTVSTDGTDN FALFVVNDND SKYSELTSGS
FNVEWNNGDA LTVSADISYS KADGEFVNGG TRAVVYQDID NEIRAAESIS YQLNDLNPAS
ISVTNDYTDL STLGLKEVGM WPYNQQNDLI AYKLDFNYQL DTAFVSSVEF GVRYSEREFN
AQRSQAGYGF EFGHNPANQP VLRLTDDMTS VVNFGGELAG YPSFLAIDFD KAVDLVNAQL
AATGQDPFAP TANWSNNWTM IQSGAVNEDV LAGYVQANLE FDLADVKVTG NLGLRVVHTD
QSSTGLQQVG FGLGEAITDE KGVVSTDYIR NEVGKTYTDY LPSLNLNFHL TDNDQLRFAA
ASVMARPPID KLKSGMGSWY DDAATPGYKK YNAWGNTSPL LDPFYADQFD LSYEHYFEDS
EGAVVVALFY KDIKSFINNF TIQPFDFEAA GFLVPDTIID NGVEFPVVKD EGQYQTAINN
DKGGYIRGVE LAYTQVFDFL PDPLSGLGFT GSYSYSDSEV QFTTDLSGSS LDIPLPGLSE
HVVNTTLFYT LDGFDTRLSM RYRSGYVSEQ VAVETQLAFF DAETIFDYQA SYALDNGLKF
LFQINNLTDE PNKTYFGEEY QTGTIQSFGR QYFLGMSYSM
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