| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1657 |
|---|
| Symbol | |
|---|
| ID | 4603908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2023478 |
|---|
| End bp | 2025034 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639781020 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_927533 |
|---|
| Protein GI | 119774793 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCC ACACATCCCC ACTCAAAGAT AAGCCGCCAC TGTCATTCTG GCAGATTTTC
AACATGTGTT TCGGCTTCCT CGGTATCCAG TTTGGCTTTG CACTGCAAAA TGCCAACGTC
AGCCGTATTT TTCAGACCCT GGGCGCCAGC ATCGATGATA TCCCCATCCT GTGGATAGCG
GGCCCCCTCA CCGGTCTCCT GGTACAGCCC ATCGTGGGCT ATCTGTCCGA CAACACCTGG
AATCGTTTTG GCCGTCGTCG CCCCTACTTT CTGATTGGCG CTGTGCTGAC CACACTGGCG
CTGTTTATCA TGCCCCACTC GCCCTATCTG TGGGTGGCAG CGGGTATGCT GTGGATAATG
GATGCCTCTA TCAATATCGC CATGGAGCCA TTTCGCGCCT TCGTAGGCGA TAAATTGCCG
GAGTCACAGC GGGCAAAAGG TTTTGCCATG CAGAGCTTTT TTATCGGCAT AGGCGCCGTG
GTGGCCTCCG CGCTGCCTTA TCTGCTGTCT AATTTTGCCG GTGTCTCCAA TATCGCGCCT
GAAGGACAAA TTGCCGACAC CGTGCGTTAC TCCTTTTATC TTGGCGGTGT TGTGCTGCTT
GCAGCCGTTG GCTGGACCAT TATCAGCAGC CGCGAATACA GCCCGGAAGA ACTCAGCCGC
TTTAAGGGGC ACGAGCAATC CGGGTTTGAA CGCCACCATG GTCGTACGCC AGAGGCTTAC
CGCAAAGGCG CTCTGGTATG GAGCACTCTG GGCCTTGCCA TCACAGCAGC AACCTTTGCC
GCCGATCTGG ATAAACAACT GTATCTGCTT GGTCTTGGTG TATTCGCCTT TGGCCCGCTG
CAATGGTACT GCGCCCAGCG TTTAAGCGCG GCGGGCAAGC GCAGCGGCAA GCTTGGAATG
GTATTTGAAG TGGTAGACGA CCTCTTCCAC ATGCCCCATG CCATGAAGCG TCTGGCGCTG
GTGCAGTTTT TCTCCTGGTT TGCGCTCTTT GCCATGTGGA TTTACACCAC GGCGGCGGTG
ACCTCGTATC ACTATCACAG CAGTGATGTG CTCTCCAAAG CCTACAATGA CGGCGCCGAC
TGGGTTGGTG TGCTCTTTGC CTCATACAAC GGCTTTGCGG CACTGGCTGC CATGGTGATC
CCGCTGCAGT GTATGCTACT GGGCCTTAAG GGCGCTCACA TCATGAATTT GTGCCTTGGC
GGGATTGGGC TGATGAGCTT TTACCTGATT GCCGATCCTG CTCTGCTGTG GATACCCATG
ATAGGGGTTG GTTTTGCATG GGCCTCTATC CTGTCTGTGC CCTATGCCAT ACTCTCCACC
AGCCTGCCGG GCAACAAGCT CGGTGTATAC ATGGGGATCT TCAACTTTTT CATTGTGATC
CCCCAGCTGG TGGCCGCCAC AGTGCTTGGT TTTATTCTCA AGAGCCTGTT TGGCAATGAA
CCCATATACG CTTTGATCCT CGGTGGCAGC GCCATGATAT TGGCCGCCCT GTCAGTACTA
TTCGTCCCTG CCAGAGAGCA GGAACCCGGG CGCAGCAATG CCGCTGCCCA GGTCTAA
|
|---|
| Protein sequence | MTSHTSPLKD KPPLSFWQIF NMCFGFLGIQ FGFALQNANV SRIFQTLGAS IDDIPILWIA
GPLTGLLVQP IVGYLSDNTW NRFGRRRPYF LIGAVLTTLA LFIMPHSPYL WVAAGMLWIM
DASINIAMEP FRAFVGDKLP ESQRAKGFAM QSFFIGIGAV VASALPYLLS NFAGVSNIAP
EGQIADTVRY SFYLGGVVLL AAVGWTIISS REYSPEELSR FKGHEQSGFE RHHGRTPEAY
RKGALVWSTL GLAITAATFA ADLDKQLYLL GLGVFAFGPL QWYCAQRLSA AGKRSGKLGM
VFEVVDDLFH MPHAMKRLAL VQFFSWFALF AMWIYTTAAV TSYHYHSSDV LSKAYNDGAD
WVGVLFASYN GFAALAAMVI PLQCMLLGLK GAHIMNLCLG GIGLMSFYLI ADPALLWIPM
IGVGFAWASI LSVPYAILST SLPGNKLGVY MGIFNFFIVI PQLVAATVLG FILKSLFGNE
PIYALILGGS AMILAALSVL FVPAREQEPG RSNAAAQV
|
|---|
| |