| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1647 |
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| Symbol | |
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| ID | 4603898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2012345 |
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| End bp | 2013493 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639781010 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_927523 |
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| Protein GI | 119774783 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.841755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCC CAGAAACCCA CAGTGATGTG ATTGAACTGA CGCGCGAGCT CATTTCACGC
CCGTCTGTCA CCCCGCTTGA TGAAGGCTGT CAGGACCTGA TGGCCAAACG TCTCGCCGCC
ATTGGCTTTA CCATCGAGCC CATGGTATTT GAAGACACCA CCAACCTCTG GGCCCGCCGT
GGCACTGAGG GTCCGGTATT CTGTTTTGCA GGCCACACTG ATGTGGTGCC GGTTGGCGAT
CTGAATCGGT GGCACACCCC GCCATTCGAT CCTGTGGTGA TTGACGGTTA TATCCACGGC
CGCGGCGCCG CCGACATGAA AGGCTCACTC GCCGCCATGG TGGTGGCCGC TGAGCGATTT
GTGGCCGAGC ACCCGGACCA TCAGGGCTCC ATCGCCTTTC TTATCACCTC CGATGAAGAA
GGCCCCTTTA TTAATGGCAC TGTGCGTGTT GTTGAAACGC TTGAAGCACG CCATGAAAAG
ATAACCTGGG CCTTGGTGGG CGAGCCTTCC AGCACCCATC TTCTCGGGGA TGTGGTGAAA
AACGGCCGTC GGGGCAGCCT TACTGGCAAC CTCACAGTCA AAGGTATTCA GGGCCATGTG
GCCTACCCCC ATTTGGCCGA TAACCCAATC CACAGGGCGG CACCGGCCCT GGCAGAGTTA
TCCCGTATCG AGTGGGACAA GGGCAATGAA TTCTTCCCGC CCACCAGTTT TCAGATTGCC
AACATCAACG GCGGCACGGG CGCATCCAAT GTGATCCCGG GTGAACTCAA GGTGATGTTC
AACTTCCGTT ACTCCACCGA AGTGACCGCT GAGACCCTGA TTGCCCGCGT ACTGGGTATT
CTCGATGCCC ATGGGCTCGA TTACGACATC GACTGGGTGT TTAACGGCCT GCCTTTCCTC
ACCGGAGAAG GCCCACTGCT GGATGCCACC CGGGAAGCAA TTTTCGAGGT AACAGGTACC
CACACCGACC CGCAAACCAC CGGCGGCACC TCCGATGGCC GCTTTATCGC GCCCACCGGT
GCTCAGGTGA TTGAGCTCGG TCCGGTCAAT GCCACCATTC ACAAGGTGAA CGAGTGCGTG
AAGGCAAGCG ATCTTGAGCT GCTCACCGGC TGCTACCAGC GCATTCTGGA AAAGCTGCTG
TGCAACTGA
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| Protein sequence | MSSPETHSDV IELTRELISR PSVTPLDEGC QDLMAKRLAA IGFTIEPMVF EDTTNLWARR
GTEGPVFCFA GHTDVVPVGD LNRWHTPPFD PVVIDGYIHG RGAADMKGSL AAMVVAAERF
VAEHPDHQGS IAFLITSDEE GPFINGTVRV VETLEARHEK ITWALVGEPS STHLLGDVVK
NGRRGSLTGN LTVKGIQGHV AYPHLADNPI HRAAPALAEL SRIEWDKGNE FFPPTSFQIA
NINGGTGASN VIPGELKVMF NFRYSTEVTA ETLIARVLGI LDAHGLDYDI DWVFNGLPFL
TGEGPLLDAT REAIFEVTGT HTDPQTTGGT SDGRFIAPTG AQVIELGPVN ATIHKVNECV
KASDLELLTG CYQRILEKLL CN
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