Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1624 |
Symbol | |
ID | 4603876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1988789 |
End bp | 1989376 |
Gene Length | 588 bp |
Protein Length | 195 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639780988 |
Product | periplasmic nitrate reductase C-type cytochrome, NapC/NirT |
Protein accession | YP_927501 |
Protein GI | 119774761 |
COG category | [C] Energy production and conversion |
COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.123114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.442563 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGGAAA AGCTTAAAAA AGTATGGCGA ACCCTCAGGA AGCCCAGTGT GCATTACAGC CTTGGTTTCC TGACCCTTGG AGGCTTTGTG GCCGGTATCA TCTTCTGGGG GGGCTTTAAC ACCGCCCTGG AAGCCACCAA CCAGGAGGCT TTCTGTATCG GTTGTCACGA GATGGAAAAC AACGTCTATG AAGAGCTGAA GACGACTATC CACTTCACCA ACCGAAGCGG CGTGCGTGCA ACCTGTCCGG ATTGCCACGT GCCGCACAAC TGGACCGATA AGATTGCCCG TAAGATGCAG GCATCGAAAG AGGTGTGGGG TAAGGTGTTT GGTACCATCA ACACCCGTGA GAAGTTCGAG GCCAAGCGCC GTGAGCTGGC AGAGCATGAA TGGGCGCGTT TAAAGGCGAA TGACTCGCTG GAATGCCGAA ACTGCCACAA CTTTGACTAC ATGGACTTTA CCCGTCAGTC ACCGAGGGCG TCGCAAATGC ACTCGACCTC ACTGGCCAGC GGCGAAAAGA CCTGTATCGA TTGTCACAAG GGGATTGCGC ATCACCTGCC TGACATGTCC GGTGTCAAAG GCTGGTAA
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Protein sequence | MWEKLKKVWR TLRKPSVHYS LGFLTLGGFV AGIIFWGGFN TALEATNQEA FCIGCHEMEN NVYEELKTTI HFTNRSGVRA TCPDCHVPHN WTDKIARKMQ ASKEVWGKVF GTINTREKFE AKRRELAEHE WARLKANDSL ECRNCHNFDY MDFTRQSPRA SQMHSTSLAS GEKTCIDCHK GIAHHLPDMS GVKGW
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