| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1622 |
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| Symbol | |
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| ID | 4603874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1985800 |
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| End bp | 1988295 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780986 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_927499 |
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| Protein GI | 119774759 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0868309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.125549 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGA ACAGACGTGA ATTTATGAAG GCCAATGCCG CACTGGCAGC GGCCAGTGTG
GCCGGGCTGG CCTTGCCGAC TTCGGCAAGT AATCTCATCA CCAGCTCAGA GCAAACCAAG
CTGGATTGGA ACAAGGCGCC TTGCCGCTTC TGCGGTACCG GCTGCTCAGT GATGGTGGCC
ACCCGTGACG GACGCGTCGT GGCGACCCAC GGCGATGCCA ACAGCGAAGT TAACCGCGGC
CTCAACTGCA TCAAGGGCTA CTTCCTGTCC AAAATCATGT ACGGTAAAGA CCGCCTGCAA
ACTCCCATGC TGCGTATGAC CAACGGTCAA TACGACAAGC ATGGCGAATT TACGCCCATC
AGCTGGGACA GCGCCTTCGA TATCATGGCC GAAAAGTGGA AAGCCACCAT CAAAGCCAAG
GGCCCGACTG CCATCGGTAT GTTCGGTTCA GGCCAGTGGA CCGTGTGGGA AGGCTATGCC
GCCTCCAAAC TGATGAAAGC CGGTTTCGGG TCAAACAACA TCGACCCCAA TGCCCGTCAC
TGTATGGCCT CTGCCGTAGT GGGCTTTATG CGCACCTTCG GTATGGATGA GCCCATGGGC
TGTTACAACG ATATGGAAGC TGCCGACGCC TTTGTGCTGT GGGGCTCCAA CATGGCCGAA
ATGCACCCCA TTTTGTGGAG CCGCGTGACA GACCGTCGCC TGAGCGCGCC CCACGTTAAA
GTTGCTGTGC TGTCTACCTT TGAGCACCGC TCCTTTGAAC TTGCCGACTT GCCTGTGGTC
TTCACACCAC AATCCGATCT GGCCATTCTC AACTTTATCG CCAACTACAT CATCCAAAAC
GACATGGTGA ACCATGACTT CGTCAAGAAG CATGTGAACT TCCGTCAGGG TGTGACTGAC
ATTGGTTACG GTCTGCGTCC GACCCACCCA TTGCAGCAAA AGGCGAAAAA CGTTGCCACG
GCAGGGGATT CGAGCCCCAT CGATTTCGCT GCGTTCAAGG ACTTCGTGTC AGAGTACACG
TTGGAAAAAA CGGCCCAGAT GTCCGGCGTT GCTGAAGACA AGCTGGTGGA ACTTGCCAAG
TTGTATGCCG ATCCCAACAC CAAGGTCACG TCTTTCTGGA CCATGGGTGT CAACCAGCAT
ACCCGCGGCG TGTGGTGTAA CAACCTGATT TACAACATCC ATCTGCTCAC AGGCAAGATC
TCTACTCCCG GTAACAGCCC CTTCTCGCTG ACCGGTCAAC CCTCAGCCTG TGGTACGGCC
CGCGAAGTGG GTACCTTTGC CCACCGTCTG CCAGCCGACA TGGTGGTGAT GAACCCTGAG
CACCGTGCCT ACGCTGAAAA AGTGTGGAAG ATCCCTGCCG GTATCATTCC GCCCAAGCCT
GGTTATCACG CGGTTGAACA AAACCGCCGC CTGAAAGACG GTGATCTCAA CGTCTACTGG
GTGCAGGTAA ACAACAACAT GCAGGCTGCG CCTAACATGA TGGAAGAAAC CTTGCCCGGT
TACCGTAATC CAGACAACTT CATCGTTGTG TCGGATGCGT ACCCAACCGT GACCACCCAG
GCGGCCGACC TGATTCTGCC TACTGCCATG TGGGTGGAAA AAGAGGGTGC CTACGGTAAC
GCTGAACGTC GGACCCAGTT CTGGCACCAG CTGGTCAAAG CGCCGGGCGA GTCACGCTCA
GATCTGTGGC AGTTGATGGA GTTCTCCAAG CGCTTTACCA CCGACGAAGT CTGGCCAAAA
GACGTGCTGG CGGCGAATCC GTCTTACAAG GGCAAAACCC TGTATGACGT GCTCTACAAG
AATGGTCATG TAGACAAATT CCCGCTCACC GATCGCGATG CCAAGTACGC CAACGATGAA
GCCGAGTACT TTGGTTTCTA CGTACAGAAG GGGTTGTTTG AAGAGTACGC CGAGTTTGGC
CGCGGTCACG GACACGATTT GGCTCCCTTC GACATGTACC ACGAAGCCCA TGGTCTGCGT
TGGCCTGTCG TCGACGGCAA AGAAACCCTG TGGCGCTACC GCGAAGGTTC AGACCCTTAT
GTCAAGCCTG GCAAGGGCTT TGAGTTCTAC GGTAAGCCCG ATGGCAAAGC GGTGATTTTC
GCGCTGCCCT ACGAGCCACC TGCAGAGTCG CCCGATGCTG AATACGATAT GTGGCTCTCA
ACCGGCCGTG TACTTGAACA TTGGCACTCA GGCTCCATGA CCCAGCGTGT ACCAGAGCTT
TATCGCGCCT TCCCGGATGC CGTGTGTTTT ATGCACCCTG ACGATGCCAA GGCCCGTGGT
TTACGCCGCG GCGATGAGGT CAAGGTCGTG TCCCGTCGTG GTGAAATTCT TACCCGTGTC
GAGACCCGTG GCCGTAACAA GCCGCCAAAA GGCCTGGTGT TTGTTCCCTG GTTTGATGCC
AGTCAGCTCA TCAACAAGGT CACCCTGGAT GCGACAGATC CCCTGTCCAA ACAGACCGAC
TTCAAGAAGT GTGCTGTCAA AGTGTTGAAG GCTTGA
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| Protein sequence | MKMNRREFMK ANAALAAASV AGLALPTSAS NLITSSEQTK LDWNKAPCRF CGTGCSVMVA
TRDGRVVATH GDANSEVNRG LNCIKGYFLS KIMYGKDRLQ TPMLRMTNGQ YDKHGEFTPI
SWDSAFDIMA EKWKATIKAK GPTAIGMFGS GQWTVWEGYA ASKLMKAGFG SNNIDPNARH
CMASAVVGFM RTFGMDEPMG CYNDMEAADA FVLWGSNMAE MHPILWSRVT DRRLSAPHVK
VAVLSTFEHR SFELADLPVV FTPQSDLAIL NFIANYIIQN DMVNHDFVKK HVNFRQGVTD
IGYGLRPTHP LQQKAKNVAT AGDSSPIDFA AFKDFVSEYT LEKTAQMSGV AEDKLVELAK
LYADPNTKVT SFWTMGVNQH TRGVWCNNLI YNIHLLTGKI STPGNSPFSL TGQPSACGTA
REVGTFAHRL PADMVVMNPE HRAYAEKVWK IPAGIIPPKP GYHAVEQNRR LKDGDLNVYW
VQVNNNMQAA PNMMEETLPG YRNPDNFIVV SDAYPTVTTQ AADLILPTAM WVEKEGAYGN
AERRTQFWHQ LVKAPGESRS DLWQLMEFSK RFTTDEVWPK DVLAANPSYK GKTLYDVLYK
NGHVDKFPLT DRDAKYANDE AEYFGFYVQK GLFEEYAEFG RGHGHDLAPF DMYHEAHGLR
WPVVDGKETL WRYREGSDPY VKPGKGFEFY GKPDGKAVIF ALPYEPPAES PDAEYDMWLS
TGRVLEHWHS GSMTQRVPEL YRAFPDAVCF MHPDDAKARG LRRGDEVKVV SRRGEILTRV
ETRGRNKPPK GLVFVPWFDA SQLINKVTLD ATDPLSKQTD FKKCAVKVLK A
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