| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1619 |
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| Symbol | |
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| ID | 4603871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1981026 |
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| End bp | 1984895 |
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| Gene Length | 3870 bp |
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| Protein Length | 1289 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780983 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_927496 |
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| Protein GI | 119774756 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.752361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.176036 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCGCTG CAAGACACTC TCTCTCCCGT GCATATTTAC AACAATGTTA TCAATCGGAT
GTAGCCCGTA TTCGTCGTGA ACTCAGAGAC ATAGAACGTC TCGGAGATGA GACTGCCAAG
GCCGCTGCAT TCGAGCGGCT GGCCGAGCGG GCCGAGGCGG CCAAAGCCAA GGTGGACGCC
AGGCTAAGCG CGCGTCCACG GATCCACTAT CCCGATAATC TGCCGGTCTC GCAAAAGCGT
GATGACATCG CCGAGGCCAT CGCCAAGCAT CAGGTGGTGA TCGTTGCCGG TGAAACGGGC
TCTGGCAAAA CCACTCAGTT GCCGAAAATC TGTCTTGAGC TTGGCCGGGG AAGTCGTGGC
CTGATTGGCC ACACCCAGCC ACGTCGTCTG GCCGCCCGCA GTGTGGCGAC CCGGGTCGCA
GACGAGCTGC AAAGCCCATT GGGCGAAGCC GTTGGCTTTA AGGTGCGCTT TGCGGACGCC
ATCAATGAAA ACAGCTATAT CAAGCTGATG ACCGACGGTA TCCTGCTGGC GGAACTGTCG
TCAGATAAGT ATTTGAATCA ATACGATACC CTTATCATTG ACGAAGCGCA CGAGCGTAGC
CTCAACATCG ACTTTATCCT GGGTTACTTA AAGCAGCTTC TGCCGAGGCG CCCGGATCTC
AAGGTTATCA TCACCTCTGC CACCATCGAT GTTGACCGGT TTTCAACGCA TTTTGACAAG
GCTCCCGTGA TTGAGGTGTC GGGGCGCACC TACCCGGTGG AAACCCGCTA CCGGCCGCTG
GTGAAGGATG ACGAGCCGGA TCTGGATTTA ATGGACGGAA TCTTTGAAGC CGTCGACGAG
CTGATGGCAG AAGGCCCGGG CGATATCCTG ATTTTTATGA ACGGTGAGCG GGAAATCCGT
GACACCGCCG AGCAGCTCTC CCGCAGGCAG TACCGCGATA CCGAGGTATT GCCGCTTTAC
GCGCGCCTGT CCTACGGTGA GCAGTCCAAG GTGTTCAAGT CCCACACCGG CAGGCGAATC
GTGCTGGCCA CCAACGTGGC CGAAACCTCG CTTACTGTGC CCGGTATTCG TTACGTGATT
GACCCGGGCA CGGCTCGCAT CAGCCGTTAC AGCTATCGCA CCAAGGTGCA GCGTCTTCCT
ATCGAACCTA TCAGTCAGGC CAGTGCCAAT CAGCGTCAGG GACGTTGTGG CCGGGTAGGG
CCGGGTATTT GTATTCGTCT CTATGAAGAG ACGGATTTTC TGTCGCGGCC GGAATTTACC
GATCCGGAAA TTCTGCGCAC CAATCTGGCG TCTGTCATCC TGCAGATGCT GGCTATTGGC
CTGGGCGACA TCAAGGGCTT CCCCTTTATT CAGCCCCCCG ATGAGCGCCA TATCAAAGAC
GGCTTTTTGC TGCTGGAAGA ACTCCAGGCC ATCAAGCTCA AGAAGGGTTT GCCGCAGATG
ACGCCTCTTG GGCGCAAGCT TGCCCATGTG CCGCTTGACC CCCGTCTTGC CCGTATGGTC
ATTGAGGCCG CCGACAGAGG CGCCTTGCAT GAAGCCCTTG TGGTCACCTC TGCATTGTCC
ATTCAGGATC CGCGGGAGCG TCCACTTGAG AAAAAGCAGG CTGCAGATGA AGCCCACAGC
CGCTTTGCCG ACAAAGACTC GGACTTTGTG TCCTTGCTGA ATTTGTGGAA CTACATCAAG
GAGCAGCAAA AGGCACTCTC CGCCAGTCAG TTCCGCAAAT TGTGCAAGCA GGAATATCTG
GCCTATCTCA GGGTGCGGGA GTGGCAGGAC TTGTACACCC AGGTGCGCCA GAGTGTTCAC
GAGCTGAAAC TCAAACTGAA TAGTGTGCCG GCGGACTACG ATAGCCTGCA CCGCGCGCTC
TTGTCGGGTC TTTTGAGTCA TGTTGGTTTT AAAGACAACA ACAATGAATA TCTGGGCGCC
CGCAATCGCC GCTTTTATGT ATTCCCGGGC TCGCCGTTGG CGAAGAAAGG CCCCAAATGG
ATAGTGGCGG CGGAGCTTAC TGAAACCAGC CGTTTGTTTG CCCGTGGCTG CGCCAAAATC
GAGCCCGAGT GGCTCGAGGA ACTTGCCGCG CATCTTATTA AGAAGCAGCA CAACGAGCCC
CAATTCGAAG CCAATCAGGG CGCCGTGGTG GCGTTTGAAA ACCAGGTGCT ATACGGGCTT
ACTGTTGTGA ATCGCCGTAA GGTGCAGTAC GGTCCCATCA ATGCCATTGA AGCGCGGGAA
ATCTTTATCC GCAGTGCCTT GGCTGAAGGT CAGCTCAAAA CCCGGGAAGC TTTCTTCCTC
CATAACCAAA AACTGCTGGA AGAAGTGGAG TCGCTCGAAC ACAAGTCCCG TCGCCGTGAC
ATTCTGGTTG ATGAGCAGGT GCTGTTCGAC TTTTACAATG AGCGACTGCC GGAAGGCATC
TACAATGCGC CCAAGCTTTT CAGCTGGTGG AAAGAGGCCA GACGTAAGCA GCCGGAGCTT
TTAAACTTCA ATGAAGACAT GCTCTATGCC CGTCAAACGG GGCACATCTC CAAGTTGGAC
TTTCCCGATG TATGGCATCA GGGCAACTTA AGCTTTGCCC TGAGTTACCA TTTCGAGCCC
GGCGCAGAGG ATGATGGGGT CAGTGTCCAT ATTCCGGTGG CGCTTCTCAA TCAGGTCGAA
GACAGTGGCT TTGACTTTTT GGTGCCCGGC CTTCGGGAAG AAAAATGCAT CGCACTGATT
AAGTCACTGC CCAAATCACT GAGGCGTAAC TTTGTACCGG CCCCGGATTA TGCCCGCGCG
GCAGTTCAGG CTATGTCACT GGATTTGCCG CTTCTTGAAT CCCTTTCCAA GCAATTACTG
CGCATGACGG GCACCCGTGT AAGCGGTGAA GACTTTGTGT TGACTGAGCT GCCTAAACAT
CTGTTGATGC ATTTTAAAAT CGAAGATGAC CACGGCAAGC TGGTGGGCGA GGGTCGGGAT
CTCGATGCCC TTAAGGCGAG TTTGCAGGGC GTTGTGGCCA AGGCTATCCG TCAGGTTGCC
AAGTCCGGCA TTGAGCAAGC CGGGCTGACA GAGTGGAGCA TCGATGATTT ACCGGCGCAG
TTTCAGCGCA AAAAAGGCAA CTATGAAGTC AAAGCCTTCC CCGCGTTGGT GGACGAAAAA
GAGTCGGTGG CGGTTAAGCT GTTTGATGAT GAGCACCAGG CGCAGAAAGC CCATGCCCAG
GGCGTGCGTC GTTTGCTGCT TATCAATATC CCATCGCCGG TAAAACATCT CCAGCAGGCG
CTGCCCAACA AGGCCAAGCT GGCCATGTAC TTTAATCCCT TTGGCCAGGT ACAGCTGCTC
ATTGAAGACA TCATAGATGC TGCTGTGGCG CAGATTTTGG ACGAGCAGCG GCTTGAAGTA
CGTACCAAGG CCGGCTTTGA TGTTGCAAGG GATGCGGTAC GTGCCGACTT AAACAGCGTA
GCTGAGCAAA TCTCCCTCAA GGTGGAGCAA ATTCTTACGC TGCACAATCA AATCAAAAAA
CGTCTCAAGG GCAAAATAAG CCTGGATATC GCCTTTGCAA TGAGCGACAT CCAGACGCAG
CTTGACCGAT TGGTATACAA GGGGTTTGTT GCCGACTGTG GTCACGCAAG ACTGAGCGAC
ATTATCCGCT TTTTAAAAGC CATAGAGCAT CGATTGGAGA AGCTGCCAGT GGATCCGGTG
CGTGACAAGT TGCAGTTGCT GTCCATCCAC AAGGTGGAGC AGGCGTTGGA GGCCCAGCTT
GCCAAGGTGC CAAAAAGCCA ACCCGTACCT GAGCATCTGT TGGAGGCACG TTGGTTGATT
GAAGAGCTCA GGGTGTCTTT GTTCGCTCAG GTGCTGGGAA CCTCAGTGCC TATCTCAGAA
AAACGGGTGT TGCTGCACAT TCAGCAATAG
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| Protein sequence | MSAARHSLSR AYLQQCYQSD VARIRRELRD IERLGDETAK AAAFERLAER AEAAKAKVDA
RLSARPRIHY PDNLPVSQKR DDIAEAIAKH QVVIVAGETG SGKTTQLPKI CLELGRGSRG
LIGHTQPRRL AARSVATRVA DELQSPLGEA VGFKVRFADA INENSYIKLM TDGILLAELS
SDKYLNQYDT LIIDEAHERS LNIDFILGYL KQLLPRRPDL KVIITSATID VDRFSTHFDK
APVIEVSGRT YPVETRYRPL VKDDEPDLDL MDGIFEAVDE LMAEGPGDIL IFMNGEREIR
DTAEQLSRRQ YRDTEVLPLY ARLSYGEQSK VFKSHTGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVG PGICIRLYEE TDFLSRPEFT
DPEILRTNLA SVILQMLAIG LGDIKGFPFI QPPDERHIKD GFLLLEELQA IKLKKGLPQM
TPLGRKLAHV PLDPRLARMV IEAADRGALH EALVVTSALS IQDPRERPLE KKQAADEAHS
RFADKDSDFV SLLNLWNYIK EQQKALSASQ FRKLCKQEYL AYLRVREWQD LYTQVRQSVH
ELKLKLNSVP ADYDSLHRAL LSGLLSHVGF KDNNNEYLGA RNRRFYVFPG SPLAKKGPKW
IVAAELTETS RLFARGCAKI EPEWLEELAA HLIKKQHNEP QFEANQGAVV AFENQVLYGL
TVVNRRKVQY GPINAIEARE IFIRSALAEG QLKTREAFFL HNQKLLEEVE SLEHKSRRRD
ILVDEQVLFD FYNERLPEGI YNAPKLFSWW KEARRKQPEL LNFNEDMLYA RQTGHISKLD
FPDVWHQGNL SFALSYHFEP GAEDDGVSVH IPVALLNQVE DSGFDFLVPG LREEKCIALI
KSLPKSLRRN FVPAPDYARA AVQAMSLDLP LLESLSKQLL RMTGTRVSGE DFVLTELPKH
LLMHFKIEDD HGKLVGEGRD LDALKASLQG VVAKAIRQVA KSGIEQAGLT EWSIDDLPAQ
FQRKKGNYEV KAFPALVDEK ESVAVKLFDD EHQAQKAHAQ GVRRLLLINI PSPVKHLQQA
LPNKAKLAMY FNPFGQVQLL IEDIIDAAVA QILDEQRLEV RTKAGFDVAR DAVRADLNSV
AEQISLKVEQ ILTLHNQIKK RLKGKISLDI AFAMSDIQTQ LDRLVYKGFV ADCGHARLSD
IIRFLKAIEH RLEKLPVDPV RDKLQLLSIH KVEQALEAQL AKVPKSQPVP EHLLEARWLI
EELRVSLFAQ VLGTSVPISE KRVLLHIQQ
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