| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1612 |
|---|
| Symbol | |
|---|
| ID | 4603864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1970262 |
|---|
| End bp | 1971680 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780976 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_927489 |
|---|
| Protein GI | 119774749 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.185448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAG TCTATTGGAT CTTTTTACTG TCCCTGGTCA CCTCGGCCGC ACTGGGCACG
CAGGGCAGTT ACAGTCGTCA ATTGATGCGT GACCAGGCCA GCTTGCTTAT TTTGGCTGAG
CCCTCACTCG AGATTGAACT AAGCCCTTTG CTACGGAATT TCGACACGGA CAGCAAGTCT
CTTGAGCGGG ACTATCTTAA GCTGAAAAAT GCCTGGCACC AGCTGGGTGT GCATTCAAGC
CCGGGGGATA TGGACCAGAG CGGCAAGATG GGTGCCAACC GGAGTGAAAC CGTCGAATCG
GCTCATCATC AAAATGCAAC ACAGGATCTC AACTCAAGAC TAATAGCCCT CGAGCCCAAC
GACCGATTCC TCAATACCAT GAACCGCTTG CGGCACTTGC TGTGGTTAGC CGAACAACCC
TGGCAACCCA TAGTGCTGAA CGGTTTGCTC AGGCCAGGTG ATTCGCATAC TGAGGTGGTG
GCAATTGCAA AGCGGCTATG GTTGCTTGGG GATATGGAGA CTGAACCTGG TTATGCTCTT
TCCCGCTATG ATGATGAAGT GGCACAGGGG GTGAAGGCAT TTCAGCATCG ACACGGGCTA
AAACAAGATG CGGTGATTGG TCCTAAAACC CTCTATTGGT TGAACCTTGC ACCCGATACG
AGAGCGGCAC GGTTAGCCAG AGACTATCTA TTGCAGAGCC GCGAGCGGCA AACGCTACCG
TCAACCTATG TGCTGGTCAA TATTCCCGCC TTTGATTTGG AGCTGGTCGA TGACGGTGAG
GCACTCATGC ACTCACGGGT AATCGTTGGT AAACCCAGCC GTAAAACGCC CTTTATTCAA
AGTGAAATAA GCGCTGTGGT GGTGAATCCC TCCTGGCGCG TGCCCCGGCG CTTGATGCGC
CTTGATGTGC TGCCAAAGGT ACGTAAAGAT GGCAGCTATC TCTCTCGAAA GGGCTTTATT
GTCTGGAGCA GGGAAGGTGA GGAAGTGAAG GAAACGGACG ACTTTTTCCA AAGTGCGGCA
GCGGGAAAGT TCCCTTACTT GCTGGAGCAA CGTCCAGGTC CGGACAATGC GTTGGGACGG
TTTAAACTGC ACTTTGCCAA CGAAGATAAT GTCTATTTGC ACGACACCCC GGATAAACAT
TTGTTTGATG AACCGATGCG GGCATTGTCG TCGGGTTGTG TCAGGGTTGA GAAAATAAAC
GAATTGTCGG CATGGCTTGC CAATGGCCGC CTTGCTGATC CGCGTCGCTG GCAACAAACC
TTGCAAACGC CACAAACCAC CCGCTGGTTT ACCCTCAAAG AACGGCTACC TGTCCATTTT
GTCTACTGGA CCAGTTGGGT CGACGCCGAA GGTAAGGCGC AATTCAGGGA AGACATCTAC
GGAATTGCGC AAAATAATCA AATTCTTGCC GCCAAATAG
|
|---|
| Protein sequence | MARVYWIFLL SLVTSAALGT QGSYSRQLMR DQASLLILAE PSLEIELSPL LRNFDTDSKS
LERDYLKLKN AWHQLGVHSS PGDMDQSGKM GANRSETVES AHHQNATQDL NSRLIALEPN
DRFLNTMNRL RHLLWLAEQP WQPIVLNGLL RPGDSHTEVV AIAKRLWLLG DMETEPGYAL
SRYDDEVAQG VKAFQHRHGL KQDAVIGPKT LYWLNLAPDT RAARLARDYL LQSRERQTLP
STYVLVNIPA FDLELVDDGE ALMHSRVIVG KPSRKTPFIQ SEISAVVVNP SWRVPRRLMR
LDVLPKVRKD GSYLSRKGFI VWSREGEEVK ETDDFFQSAA AGKFPYLLEQ RPGPDNALGR
FKLHFANEDN VYLHDTPDKH LFDEPMRALS SGCVRVEKIN ELSAWLANGR LADPRRWQQT
LQTPQTTRWF TLKERLPVHF VYWTSWVDAE GKAQFREDIY GIAQNNQILA AK
|
|---|
| |