Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1600 |
Symbol | rlmL |
ID | 4605959 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1954713 |
End bp | 1956839 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780959 |
Product | 23S rRNA m(2)G2445 methyltransferase |
Protein accession | YP_927477 |
Protein GI | 119774737 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase [COG1092] Predicted SAM-dependent methyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAACT TTTTTGCAGC CGCCCCAAAG GGCTTTGAAT ATGCACTTGC CAAAGAATTG GAAACCCTTG GCGCAGAGAA CGTGCGCGAA AGCGTCGCCG GCGTGTATTT CAGTGCCTCG TTGGCGCAAG GCTACCAGAT TACCCTGTGG ACACGTTTGG CCAGCCGTAT CGTTCTGATC CTTTTCACCG GTGAGTGCCA GAGCGCTGAG CAACTCTACA ATGCGGCTTA CACCATTGAT TGGCCATCGC ACTTCAGCAA TCGCAGTACC TTCAGCATCG ATTTTCACGG TACCGGCGGC TTTATCAATA ACAGCCAGTT TGGTGCACTG AAAATCAAAG ATGCTGTAGT CGACAGATTC CGTGATGACG ATTTAAGTCG CCCGGATGTG GTTAAAGGCC ATCCGGACAT GCGTATCGAC GCCCACTATG GCCGCGGTAA AATTACCATC GGGATTAACT TTTCCGGCGC GGCGCTGCAC CAGCGTGGCT ATCGCGGCAA TACCGGCGAA GCGCCATTGA AAGAAAACCT TGCCGCCAAC ATGTTGTATC GCAGTGGTTG GGCCGACAAT CCGGTTACCT TGCTGGACCC TTTCTGCGGC AGTGGCACTG TGCTGATTGA GGCTGCATTG ATGGCCTGTG ATATTGCGCC GGGCCTGATG CGAGAACGAT TTGGCTTTGA ACACTGGCGC AGACACGACC AGGCCCTCTG GCAACAGGTA ATCGAGGAAG CCAAGGCCCG TGCTTCTCTG GGTAAAACCC GATGTCAGCT TAAGTTTTAT GGCTCGGATA TAGACTCGCG GGTTGTAGCG CTTGCCAAAC GCAATGCCAA CAGTGCCGGT GTGTTTGACT TTATCGACTT TAAAGTGGCC AATGCCCTTA ATCTGGAGCC GCCGGTGGCA GAGGGTATGG TGTTGACCAA CCCGCCTTAT GGTGAGCGCC TGGGGAATGT CACCAGCTTG CTGCAGCTCT ACTTCCAGCT TGGTGAAAAG TTCAAGCAGA GCTACGGTGG CTGGAAGCTC GGTTTGCTTT GCAGCGATAT GGAGTTGGTA TCTTCGCTAA AGCTCAAAGC CGACAAACAG ATGAAGATGT ACAACGGGGC TCTGGAATGC GCCTTTAATC TGTATACCCT GCATGCCACC AGTACCCGTC GTGATATTCC TGTGGATACC ACGGGCCAGG GCGGCGAGAT TGCCGCGCCT TTTGCCAATC GTTTGAAGAA AAACCTCAAG CAGCTGGAAA AATGGGCCAA GCGAGAAGGC ATCGACAGTT ACCGTCTGTA CGACGCCGAT ATCCCCGAAT ACAACGTCGC CGTCGACCGA TACCTGGATT ACGTGGTAGT GCAGGAATAT GCGGCGCCTT CAGCCATTCC TGAAGCTGTC ACCAAAAGAC GCCTCACCGA TGTGCTGCTC GCCTTGCCAC GTGCGCTTGG TATAGACCCG GACAAGATAG TGCTTAAAAC CCGTGAGCGT CAGAAGGGCA CCAATCAGTA CCAAAAATTG GATGGTGAAA AGCTTGAGCT TGTGACCACC GAGTATGGCT GCAGCTTCAA GCTGAACCTC ACCGACTATC TGGACACTGG ACTGTTTCTC GACCACCGAC TGACCCGTAA ACTGGTGGGA GAAAAGGCCA AAAACAGAGA TGTGCTTAAC CTCTTTGCCT ATACGGGCAG CGCGTCTGTG CACGCCGGTA AGGGCGGTGC CAAATCTGTC ACTACAGTGG ATATGTCCAA TACCTATCTC AACTGGGCCA AAGACAACTT TATGTTGAAC GGCCTGATTG GACGCCAGTA TCAGTTTGAA CAGGCAGACT GCCTACAGTG GATCCGTGAT TGCGAAAGGC AGTTTGACCT GATTTTTATC GACCCGCCCA CCTTCTCAAA CTCGAAGAGG ATGGAAGACT CTTTCGATGT ACAGCGTGAC CACGTGGATT TGCTGGCATC CCTGAAAAAG CTGTTGCGTC CGGGGGGGGA AATTGTGTTC TCCAACAATA AACGCAAGTT CAAAATGGAT ATGGAAGCCC TCGCGGCGGC TGGCCTCAAG GCGGTAAACA TTGACGATAA GGTGTTGCCA ATGGACTACG CCCGTAATCC GCAAATCCAT AACTGCTGGG TTGTGACCCA TGGCTGA
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Protein sequence | MFNFFAAAPK GFEYALAKEL ETLGAENVRE SVAGVYFSAS LAQGYQITLW TRLASRIVLI LFTGECQSAE QLYNAAYTID WPSHFSNRST FSIDFHGTGG FINNSQFGAL KIKDAVVDRF RDDDLSRPDV VKGHPDMRID AHYGRGKITI GINFSGAALH QRGYRGNTGE APLKENLAAN MLYRSGWADN PVTLLDPFCG SGTVLIEAAL MACDIAPGLM RERFGFEHWR RHDQALWQQV IEEAKARASL GKTRCQLKFY GSDIDSRVVA LAKRNANSAG VFDFIDFKVA NALNLEPPVA EGMVLTNPPY GERLGNVTSL LQLYFQLGEK FKQSYGGWKL GLLCSDMELV SSLKLKADKQ MKMYNGALEC AFNLYTLHAT STRRDIPVDT TGQGGEIAAP FANRLKKNLK QLEKWAKREG IDSYRLYDAD IPEYNVAVDR YLDYVVVQEY AAPSAIPEAV TKRRLTDVLL ALPRALGIDP DKIVLKTRER QKGTNQYQKL DGEKLELVTT EYGCSFKLNL TDYLDTGLFL DHRLTRKLVG EKAKNRDVLN LFAYTGSASV HAGKGGAKSV TTVDMSNTYL NWAKDNFMLN GLIGRQYQFE QADCLQWIRD CERQFDLIFI DPPTFSNSKR MEDSFDVQRD HVDLLASLKK LLRPGGEIVF SNNKRKFKMD MEALAAAGLK AVNIDDKVLP MDYARNPQIH NCWVVTHG
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