Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1585 |
Symbol | |
ID | 4603837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1928153 |
End bp | 1930198 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639780941 |
Product | carboxy-terminal protease |
Protein accession | YP_927462 |
Protein GI | 119774722 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00663256 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAAAC TATCTCTGGC GGTATCCATT GCCGGGATCC TGGTAGGATC TTCTGCGTGG GCCATAGCGC CTGCCATTCA AATCGATGAG CTGCCCTCTC TGGTGCAGGA GCCTCAGCAC AAGGTGGCCT CCAAGCGGGT AGCGGATCTT TTTACCCGCT CACACTACCA CAGGTTCAGC CTGGACGATG CCTTCTCCGA ACAGATTTTC GACCGTTACC TTAAGCAGTT GGATTACCGT CGTAATGTGC TGACTCAAGC CGATGTGCAG AACTTCGAAA AGTATCGCCA TCAGTTTGAT GACATGCTCA AAAACGGCGA TATGACAGGC GCCTACGACA TGTTCGATCT GGCCCAAAAG CGCCGGTATG AAGGTTTTGT TTACGCGCTG AGTCTGCTAG ATAAAGAAAT GGACTTTTCT CAGGCGGGTG ACAAGTACCA GTATGACCGT GAAGACGCTC CCTGGGCTAA GGACGAAGCC GAAATTCAGG AATTATGGCG TCAGCGCGTT AAATATGATG CGTTGAACCT TAAGTTGACC GGTAAAAACT GGACTGAAAT CGTTGATGTG CTGCAAAAGC GCTACAACAA CGCCATCAAA CGCCTGGGCC AAACCCAGAG CGAAGATGTA TTCCAGACAG TAATGAACGC GTTTTCACGC AGCATCGAGC CCCACACCAG CTATCTTTCC CCACGCAATG CCGAGCGTTT CCAGATGGAA ATGAACCTCA GCCTCGAGGG CATTGGCGCT GTGTTGCAAA TGGATGACGA CTACACCGTT ATCAAGAGCA TGGTTGCAGG TGGCCCTGCT GCCAGCAGTG AAAAATTGTC CCCCGATGAC CGCATCATAG GTGTAGGTCA GGAAGGTGGT GCCGTGGTGG ACGTGATTGG CTGGCGTCTC GATGACGTAG TCGACCTTAT CAAGGGCCCC AAAGGCAGCA AGGTCACCTT GCAAATTCTA CCCAAGAAAG GTGGCTCCAA CGCCAAACCA GTCGAAGTGA CCCTGGTCAG GGATAAAATT CGCCTTGAAG ATCGGGCTGC TACGTCCAAA GTGATTGAGC CCAACGAGGG GCAGTATGCC AACCGTAAGG TAGGCGTTAT TCAGATCCCC GGTTTCTACA TGAACCTGTC TCAGGATGTG GCTAAAGAGC TGCAAACCCT GAAAGAGGCG AAAGTAGAAG GTGTGATTAT TGATCTGCGT GGCAATGGTG GTGGCGCCTT GACCGAAGCT GTGTTGCTGA CAGGGCTCTT TATCGATATG GGGCCTGTGG TGCAGGTACG CGATGCCAAT GGCCGCGTTT CCCAGCACAG AGACAACGAT GGCAAGGTCA CTTATTCAGG TCCCCTGACT GTGATGGTGG ACCGTTACAG TGCTTCTGCG TCTGAAATTT TTGCGGCCGC CTTGCAGGAC TACCAGCGTG CGCTGATTGT TGGTGAGTCA ACCTTCGGTA AGGGCACAGT TCAGCAGCAT AAGGGCCTGG CGCGCATATA CGATCTGTAT GAAAAGCCAG TTGGCCATGT GCAGTACACA ATTCAGAAGT TTTACCGTAT CAACGGTGGC AGCACCCAGC TTAAAGGGGT TACACCGGAT ATCCCGTTCC CCAGTGCCCT CGAGCCTGGA GAATACGGCG AGGCTGAAGA AGATAACGCA CTGCCCTGGG ATAAGGTACC TGTGGCCCAG TACAGCACGG TGGATGCTAT CAGTGCCCCC CTCATTGCTG AACTGGATGC CAAACATCAG GGTCGCATCA AGTCAGATGT GGAATTTGGC TATATTTATC AGGATATTGC TGAATATAAA AAGCACCACG ATGAAAAGTC TGTATCACTG GTGGAAAGTG AGCGCATTGC TGAGCGTGAA GCTGATGACA AGAAACAGCT CGATCGCACC AATGAACGCC GCACCCGCGC CGGCCTCGAT AAGGTAGCGA GCCTGGATGA TATCGAGAAA GATATCGAAG CGCCGGATCC ACTGCTGGAT GAAACTGCCT ATATCACACT GGATCTGGTT GATGCGGGCA AACTTGCGGC AACCAGCAAG CACTGA
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Protein sequence | MRKLSLAVSI AGILVGSSAW AIAPAIQIDE LPSLVQEPQH KVASKRVADL FTRSHYHRFS LDDAFSEQIF DRYLKQLDYR RNVLTQADVQ NFEKYRHQFD DMLKNGDMTG AYDMFDLAQK RRYEGFVYAL SLLDKEMDFS QAGDKYQYDR EDAPWAKDEA EIQELWRQRV KYDALNLKLT GKNWTEIVDV LQKRYNNAIK RLGQTQSEDV FQTVMNAFSR SIEPHTSYLS PRNAERFQME MNLSLEGIGA VLQMDDDYTV IKSMVAGGPA ASSEKLSPDD RIIGVGQEGG AVVDVIGWRL DDVVDLIKGP KGSKVTLQIL PKKGGSNAKP VEVTLVRDKI RLEDRAATSK VIEPNEGQYA NRKVGVIQIP GFYMNLSQDV AKELQTLKEA KVEGVIIDLR GNGGGALTEA VLLTGLFIDM GPVVQVRDAN GRVSQHRDND GKVTYSGPLT VMVDRYSASA SEIFAAALQD YQRALIVGES TFGKGTVQQH KGLARIYDLY EKPVGHVQYT IQKFYRINGG STQLKGVTPD IPFPSALEPG EYGEAEEDNA LPWDKVPVAQ YSTVDAISAP LIAELDAKHQ GRIKSDVEFG YIYQDIAEYK KHHDEKSVSL VESERIAERE ADDKKQLDRT NERRTRAGLD KVASLDDIEK DIEAPDPLLD ETAYITLDLV DAGKLAATSK H
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