| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1584 |
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| Symbol | |
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| ID | 4603836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1927464 |
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| End bp | 1928123 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780940 |
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| Product | putative solute/DNA competence effector |
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| Protein accession | YP_927461 |
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| Protein GI | 119774721 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.107555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCAA CAGAAAAGTT GACCGACACC AATGCGATTC TCGCGTATTT ATATGAAACC
TTTCCTTTGT GCTTTGTGGC CGAGGGTGAA ACCAAGCCAC TGAAAATTGG ATTGTTTCAA
GATTTGGCTG AAAGGTTGGC TGATGATTCT AAGGTCAGTA AAACACAATT GCGTGTTGCC
CTGCGCCGCT ACACCAGCAG CTGGCGCTAT CTGAAGTGCA TCAAAGCCGG TGCGGTCCGT
GTTGATTTGG ACGGCAACCC ATGCGGTGAG CTGGAGCAGG AACACATTGA CCACGCACAG
GCTACACTGA AAGAAAGTCA GGACAAGGCA AAGGCCAAGC GTGCCGAGCG CAGCAAGGAT
GAGGGCGACG CTGCCGATAA AGCGCCTCGT AAGCCTAAAC GTAAGCCCCA GCCTCAAGCA
CGTCGCGACG CCAAGCCCGC AGCCAAAGAC AAGCCCAAAG CCGCACCCAA AGCGCCAGCC
GTACCCATCA ATCTGGTGCC TGCCAAGCTC GAAGAGCTCA AGGTGGCCCA GCGCGTTAAC
GTGAAATTGG GCATGTCACC TGTGGCCGGT TCAATTGTGG ACATCAATAA GGGCGATGTG
CATGTACAGC TGGACTCAGG CTTGACAGTG AAAGTCCGCG CCGAGTATAT ACTGCTGTAA
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| Protein sequence | MESTEKLTDT NAILAYLYET FPLCFVAEGE TKPLKIGLFQ DLAERLADDS KVSKTQLRVA
LRRYTSSWRY LKCIKAGAVR VDLDGNPCGE LEQEHIDHAQ ATLKESQDKA KAKRAERSKD
EGDAADKAPR KPKRKPQPQA RRDAKPAAKD KPKAAPKAPA VPINLVPAKL EELKVAQRVN
VKLGMSPVAG SIVDINKGDV HVQLDSGLTV KVRAEYILL
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