| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1578 |
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| Symbol | |
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| ID | 4603830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1920653 |
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| End bp | 1922257 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780934 |
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| Product | small-conductance mechanosensitive channel |
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| Protein accession | YP_927455 |
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| Protein GI | 119774715 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00006998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGA TTTATCAGGT TTTTATCCTG TTTTGTTTTG CATTGTTCAG CAGTTTGAGC
ATGGCCAATT CGTCCCTGAC CTTGATGCAG GCGCTGGATA AGTCCAGTGA GATAGAGGAG
GTGCAAGCCC CGACGCCCGA GCAATACTCA TACCGCGATC CTCTGTGGCG GGATACCCCC
AGAGGTGCGT TACAGGGATT CTTGAAAGCG GCCTGGGATC AGGATTACGC CCGGGCTTCG
GAGTACTTGG ACTTGCGATT TTTGCCGGGC CGGATGAGCC CTGCTCAAGG GGAAAAGTAT
GCACGGGATC TGCAAGCCAT TCTGGACCGT AACATCTGGA TTGACCTGGG CACAGTGAAT
GACACGCCAC AGGGCAATGA GCAGGATAAT CTGCCAGCCT ATCGCGATGC ATTTGCCCGT
ATTCAGGTGG GTAACAAGGA TGCGGTGTTT TTTCTGCAGC GCGTGCCTGA TGCTGATATC
GGCAGTATCT GGAAAATCTC CAATGCCACC ATAGCCCAGG TGCCGACACT TTACGAAAAG
CTGGGGTATG GACCTTGGGT AGAATGGTTT ATTGCCCACG TGCCAGAGGG ACGACTATTC
AGGCTTAACC TTTGGGAATG GGCTTTTATG CTCACATTCC TGACGGCATC ATTGTTGTTG
GTGATCCCGG TTACCTGGAT TGTGAAATGG CTGCTGCTGA GGACCCAATG GCAACACAAG
GAGGAAACAG CCGCGATAGT CACAGGGCCA CTGTGCTTTT TTATGGCTGT GATGCTCAAT
AAGGCGGCGA TTCTACAAAC GACCTTGCCG GTGATGACCA AAGAGCTTAT CGATACCGGG
GTGTTTTTAG TGCTGACATT GGTGTGGCTG CTCTGGTCGC TGATGGGACT CATGCAAAGT
GTGCTCAAGG CACGCTGGAC GGAAAAGGGC AGTAAGCAGG CCGCCTCACT GCTGCGGCCA
TTGACCAATT TCTTGCGCAT TTTTATGTTG GCAATGGTGT CGCTGATTTG GTTGCAACAT
CTGGGTTTCA ATGTGGGGGC GATTCTGGCG GGGATGGGTA TTGGTGGCAT CGCGTTGGCG
CTGGCCTCCA AACAGTCCAT CGAAAACTTT ATTGGCACTG TGACCCTGTA TTCATCTGCT
CCGCTCAAAG TAGGTAACCT GTGTAAGCTG GGCAGTTTGC GGGGCACAGT GGAAGAGATT
GGTCTGCGCT GTACCCGTAT TCGCACCCTC GACCGGTCTG TGATCCATAT TCCCAATGCC
AAGCTGGCGG AAATGGAAAT TGAAAACATC TCAGAGCGGG AAAAAATCCG CTTTAAAACC
GATATCCGCC TGGATTACAA CACCAGCGCC GAGCAAATCA AAAAAATCAC AGAAGATATC
AAAGTCTTGC TTGAAACTAC TGATAAGGTT AACGAAAAGC CTCTGAGGGT CACCTTCAGC
GGTTTTGGCT TGCACGGACT TGAAATCAAT GTATTTGCCT ATGTGGGTAC TACGAGTTTG
CCGACGTACC AACAGGTGGC ACACGAGCTG AATCTCGGCA TTATGGAAAT CGTGGCCAAA
CACGGCTCCA AGGTGGTGCC GGCCATCGCG CCGGTAGCGC CTTAA
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| Protein sequence | MKRIYQVFIL FCFALFSSLS MANSSLTLMQ ALDKSSEIEE VQAPTPEQYS YRDPLWRDTP
RGALQGFLKA AWDQDYARAS EYLDLRFLPG RMSPAQGEKY ARDLQAILDR NIWIDLGTVN
DTPQGNEQDN LPAYRDAFAR IQVGNKDAVF FLQRVPDADI GSIWKISNAT IAQVPTLYEK
LGYGPWVEWF IAHVPEGRLF RLNLWEWAFM LTFLTASLLL VIPVTWIVKW LLLRTQWQHK
EETAAIVTGP LCFFMAVMLN KAAILQTTLP VMTKELIDTG VFLVLTLVWL LWSLMGLMQS
VLKARWTEKG SKQAASLLRP LTNFLRIFML AMVSLIWLQH LGFNVGAILA GMGIGGIALA
LASKQSIENF IGTVTLYSSA PLKVGNLCKL GSLRGTVEEI GLRCTRIRTL DRSVIHIPNA
KLAEMEIENI SEREKIRFKT DIRLDYNTSA EQIKKITEDI KVLLETTDKV NEKPLRVTFS
GFGLHGLEIN VFAYVGTTSL PTYQQVAHEL NLGIMEIVAK HGSKVVPAIA PVAP
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