| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1576 |
|---|
| Symbol | |
|---|
| ID | 4603828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1919094 |
|---|
| End bp | 1920017 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639780932 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927453 |
|---|
| Protein GI | 119774713 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0153483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGTC CCAGCCCAGT AGATCCCTTT TCCTTTTTTG GCCACAGTTT GTGGATTAAA
CGGGACGATT TATTGCCTGA ACCCTTCAGT GGCAATAAGG GGCGTAAATT TGCCAGTTTG
CTGGCTGACA GCTTTGATGG CGTGCAAACC CTGATTGGCT ATGGTTCGCC CCAGTCCAAT
TCGCTTTATT CGCTGGCGGC GTTGGCGAGC AGGCGTGGCT GGCAACTGGA GTTCTATGTG
GACCACATCG CCGCAAGCAT CTATCGGGGG GAAGAGGGCA ATTATGGCGG CGCGCTGGCA
CTTGGCGCCA CGGTAATCAC AGTACCAGAG CCAAATATCT CGCCCCGTGA ATACATCGAG
TCAATTCGCT TAAAGCAGAT GGACGCTGAC GCGTGTCTCT ATGTGCCGGA AGGTGGACGA
TGCGCCCTCG CGCGCAGGGG TGTGCATACG CTTGGTCGCG AAATTGCGGA TTGGGCAGCC
GCCCGTGGCG TGGCTCATCT GAACGTGTTT CTGCCGTCCG GCACAGGCAC CACGGCACTT
TACCTCAGTG AGTATTTCCA TCAGCAGCAT TGTGATATCA GGGTGGTGAC TTGCCCTGTG
GTGGGGGATG GCGATTATCT TTTTGACCAG TTTGCTGAAT TAAGTGCCGA CAGTCACATT
TACCCCGAGG TGGTTGGAGA CGCCCATCAT TACGCCAAAC TCAAGCGTGA TGAGCTGGAG
ATTTGGCTGG CTATGCGGCG CCAGGGGCTG GAATTTGAGT TGTTGTACGA TCCTTGCGGG
CTGCTGGTAT TGAAGTCACT GCTGGATGCC AATGCAGAGG GAAACTGGCT GTACCTGCAT
CAGGGTGGGC TTAGGGGGAA TGTGTCCATG TTGCCCCGCT ATCGGCGCAA GTTTGCACAG
TTATTCGAAC GAGATGTCGC CTGA
|
|---|
| Protein sequence | MPSPSPVDPF SFFGHSLWIK RDDLLPEPFS GNKGRKFASL LADSFDGVQT LIGYGSPQSN
SLYSLAALAS RRGWQLEFYV DHIAASIYRG EEGNYGGALA LGATVITVPE PNISPREYIE
SIRLKQMDAD ACLYVPEGGR CALARRGVHT LGREIADWAA ARGVAHLNVF LPSGTGTTAL
YLSEYFHQQH CDIRVVTCPV VGDGDYLFDQ FAELSADSHI YPEVVGDAHH YAKLKRDELE
IWLAMRRQGL EFELLYDPCG LLVLKSLLDA NAEGNWLYLH QGGLRGNVSM LPRYRRKFAQ
LFERDVA
|
|---|
| |