| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1575 |
|---|
| Symbol | |
|---|
| ID | 4603827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1918452 |
|---|
| End bp | 1918859 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639780931 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927452 |
|---|
| Protein GI | 119774712 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3304] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00720647 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTGC TCAGGCTTAT ATTTAATATC GCGTGGTTTG TACTTGGTGG CTTTGTCATG
GGGCTGGCCT GGTGGCTTGC TGGTGTGCTG TGCTTTATCA GTATTATCGG CATTCCCTTC
GGACGAGCCT GTTTCGTAAT TGGTGAAATG GCGTTTTGGC CCTTTGGACA GGACCATGTC
TCCCGCCGCG AGCTTACCGG CCTGGAAGAT TTGGGGACAG GCCCCCTTGG CATGGTGGGC
AACGTTATAT GGTTTTTGCT GTTTGGGATC TGGCTTGCCA TTGGTCACAT TGGCCACGCA
CTGGCCTGCT TTATCACCAT TATCGGCATT CCATTCGGCA TACAGCACCT TAAATTGGCT
CTGCTCAGCC TGACCCCGAT TGGACGCACA GTCGTTACTC GTGCGTGA
|
|---|
| Protein sequence | MALLRLIFNI AWFVLGGFVM GLAWWLAGVL CFISIIGIPF GRACFVIGEM AFWPFGQDHV
SRRELTGLED LGTGPLGMVG NVIWFLLFGI WLAIGHIGHA LACFITIIGI PFGIQHLKLA
LLSLTPIGRT VVTRA
|
|---|
| |