| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1571 |
|---|
| Symbol | |
|---|
| ID | 4603823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1915710 |
|---|
| End bp | 1916504 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780927 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927448 |
|---|
| Protein GI | 119774708 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2013] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00266] conserved hypothetical protein TIGR00266 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.005738 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAC GTTGTCACGA AGTGGACTAT GAAATTCGCG GCGAAAGCAT GCAGCTGGTG
GAAGTGGAGC TGGATCCCGG TGAAACCGTA ATTGCCGAGG CCGGTGCCAT GACTTACATG
GAAGAGGGCA TTCAGTTTGA GGCCCGCATG GGTGATGGCT CCCAGCCCGA ATCCGGCTTT
TTCGGCGCCC TGATGGGCGC TGGCAAGCGT ATGCTTACCG GTGAGAGCCT GTTTATGACC
CACTTTACCA ACCAGGGGCA TGGTAAGCGT AGGGTGGCGT TTTCAGCACC TTACCCCGGT
ACCTTGCTGG CGCTGGATAT GGCCGAGCTT GGCGGCGAGC TGATTTTGCA AAAAGACAGT
TTCCTCGCAG CAGCCTTGGG AACCCAAATC ACCATGACCT TTAACAAGCG CCTGGGTACC
GGTTTCTTTG GAGGTGAAGG TTTTATCATG CAAAAGCTCA AGGGTGATGG CATGGCCTTT
GTTCACGCCG GTGGCACCCT TATCAAGAAG GAACTCAAGG GCGAGACGTT GCGGGTGGAT
ACCGGCTGTT TGGTGGGCTT TACCCCCGGC ATCGATTACG ACATTCAGCG GGCCGGCTCG
CTTAAGTCCA TGGTATTTGG TGGTGAAGGT CTGTTTTTGG CTACCCTCAG TGGTCATGGC
ACTGTGTGGC TGCAAAGCCT GCCATTCTCC CGTATGGCCG ATCGTATTAT CGCCCATGCG
CCGTCGGCGG GTGGTTCCAG CCGTGGTGAA GGTTCGGTGC TTGGCGGCCT TGGCCGCATG
CTGGATGGCG ATTGA
|
|---|
| Protein sequence | MMRRCHEVDY EIRGESMQLV EVELDPGETV IAEAGAMTYM EEGIQFEARM GDGSQPESGF
FGALMGAGKR MLTGESLFMT HFTNQGHGKR RVAFSAPYPG TLLALDMAEL GGELILQKDS
FLAAALGTQI TMTFNKRLGT GFFGGEGFIM QKLKGDGMAF VHAGGTLIKK ELKGETLRVD
TGCLVGFTPG IDYDIQRAGS LKSMVFGGEG LFLATLSGHG TVWLQSLPFS RMADRIIAHA
PSAGGSSRGE GSVLGGLGRM LDGD
|
|---|
| |