| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1569 |
|---|
| Symbol | |
|---|
| ID | 4603821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1913337 |
|---|
| End bp | 1914497 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780925 |
|---|
| Product | homogentisate 1,2-dioxygenase |
|---|
| Protein accession | YP_927446 |
|---|
| Protein GI | 119774706 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTTT ATGTGAAGCA AGGTCAGATC CCGCACAAGC GCCATATCGC GTTTGCCAAG
GAAAATGGAG AGCTTTACCG CGAAGAGCTG TTCTCTACCC ACGGGTTTTC GAACATCTAT
TCCAATAAGT ACCACCACAA TATGCCCACC AAGGCGCTGG AAGTGGCCCC TATGTCACTG
ACCCACGGCG ACACCTGGGT CGATTCGCTG GTACAGAACT ATAAGCTGGA CTCACGTCTG
GCCGATGGTG AAGGCAATTT CTTCTCTGCC CGCAACAAGA TTTTCTTTAA CGCAGATGTC
GCGCTCTACA CCGCCAAGGT GACTGCCGAC ACCGACGAGT TTTACCGTAA CGCCTATGCC
GATGAAGTGG TGTTTGTACA CGAAGGCGAC GGCGTGCTCT TGTCTGAATA CGGCGAGCTT
GAAGTCAAGA AGTGGGACTA TCTGGTCATT CCGCGCGGCA CGACTTATCA GCTGAAGTTC
AACGATTACA GCAATGTACG CCTGTTCGTG ATTGAATCTT TCACCATGGT GGAGATCCCT
AAGCATTTCC GTAACGAATA CGGTCAGCTA CTGGAATCTG CCCCTTACTG CGAGCGCGAT
ATCCGCGTCC CCGAGCTAAA AGACGCCGTG GTTGAGCGCG GAAACTTCCC GCTGGTGTGT
AAGTTTGGCG ATAAGTACCA ACTGACTCAG CTGGAGTGGC ATCCCTTTGA TTTGGTGGGC
TGGGACGGTT TTGTCTATCC CTGGGCCTTC AACATCACCG AATACGCGCC CAAGGTGGGT
AAAATCCACC TGCCGCCGTC GGATCACCTG CTGTTTGTGG CCAGAAACTT CGTTATCTGC
AACTTTGTAC CGCGCCCCTA TGATTTCCAC CCGCAGGCGA TCCCGGCCCC GTACTACCAT
AACAACATCG ACAGTGACGA AGTGCTCTAT TACGTCGACG GTGATTTTAT GAGCCGCACC
GGCATTGAAG CCGGTTACAT CACCCTGCAC CAGAAAGGCG TGGCCCACGG CCCGCAACCC
GGCCGCACCG AGGCCTCCAT AGGCAAGAAG GACACCTACG AGTACGCCGT GATGGTAGAC
ACCTTTGCGC CACTGCAGCT GACCGAACAC GTGAAAAACT GCATGGCACC CGATTACAAC
CGCTCCTGGC TCGAAGACTA A
|
|---|
| Protein sequence | MPFYVKQGQI PHKRHIAFAK ENGELYREEL FSTHGFSNIY SNKYHHNMPT KALEVAPMSL
THGDTWVDSL VQNYKLDSRL ADGEGNFFSA RNKIFFNADV ALYTAKVTAD TDEFYRNAYA
DEVVFVHEGD GVLLSEYGEL EVKKWDYLVI PRGTTYQLKF NDYSNVRLFV IESFTMVEIP
KHFRNEYGQL LESAPYCERD IRVPELKDAV VERGNFPLVC KFGDKYQLTQ LEWHPFDLVG
WDGFVYPWAF NITEYAPKVG KIHLPPSDHL LFVARNFVIC NFVPRPYDFH PQAIPAPYYH
NNIDSDEVLY YVDGDFMSRT GIEAGYITLH QKGVAHGPQP GRTEASIGKK DTYEYAVMVD
TFAPLQLTEH VKNCMAPDYN RSWLED
|
|---|
| |