| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1563 |
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| Symbol | cpdB |
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| ID | 4603815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1903084 |
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| End bp | 1905192 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780919 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_927440 |
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| Protein GI | 119774700 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCGTG CCCACAGAGG CGCGCCCGGG GTTAACATTT CAAGAGATAC GGATATGAAT
CAAAAACATC TGTTGGCGGT AACCATTGCC GCTGCATTGG GCGTCAGCGC CTGCGGCTCT
GATAATAACG ACGTGGAAAA AGAGGTGCTG GTAGACCTGC GGGTGATGGA GACCACGGAT
CTGCACACCA ACATCATGGA CTTCAACTAC TACAGCGGCA AAGAAGATCC AACCATAGGC
CTGGCCCGCA CCGCCAGCCT TATCAAGGCT GCCGCCCATG AAGCCCCCAA CCACGTACTG
GTAGACAACG GCGACCTGCT GCAGGGCAGC CCCATGGGCG ACTATATGGC TAAAATCGGC
ATTGCCGAAG GCGCCGTGCA CCCGGCTTAC AAGGCTATGA ATCTGCTGGG ATACAGCGTG
GGTAACATCG GCAACCATGA ATTTAACTAT GGCCTGGATT TCCTCGAAAA ATCCCTGGCC
GGTGCCGAGT TCCCGTACAT CAACGCCAAC GTCTACTGCG CCGACGATAA CGGCTGCTGG
AAAGGCATCA AAAAGGGCGA GCACCTGTTC ACCCCTTACC TGATTGAAGA AAAAGAAGTT
ATCGACCAAA ACGGCGATAA ACACGTCATT AAAATCGGCT ATATCGGCTT TGTACCACCG
CAAATCATGC TGTGGGACAA ACAAAACCTC ACCGGCAAGG TTGAGCCTGC TGACATCCTT
GAAACAGCGC AAAAGTACGT GCCTGAAATG AAAGCCAAAG GGGCCGATAT TATTATCGCT
ATTCCTCACT CAGGTATTGG CTCGGTGGAA AACCCGGGCG ATCCCATGGC TGAAAACGCC
ACCTATGCCC TCACCCGCGT AGAGGGCATC AATGCCATCA TGTTTGGCCA CAGCCACTCC
ATCTTCCCGG ATGCACGTTA CAGTGACCTG CCCAATACCG ACGTTGAAAA AGGCCTGCTG
AACGGCGTGG CCGCCGTAAT GCCCGGCCGC TGGGGCGATA ACCTTGGTGT GGTCGACTTC
AAACTGGCCC GCAAAGACGG CAAGTGGGCA GTGCTCGATG TAAAGACTGA AGCACGCCCC
ATCTATGACG GTGCCAACAA GGCGCCACTG GTGGATGCCG ACAAAGACAT CCACGATGCC
GTGGAGCTTG AGCATCAGGG CACCCTCGCC TTTGTGGATG AACCCATTGG TGTGGCCGCC
GCCGACATGT ACAGCTTCCT CACCCTGGTG CAGGACGACC CAACGGTGCA AATCGTGTCT
GATGCGCAAA TTGCCAACGT GAAGGCCAAG CTGCCCTCAT CTCTCGCGCA CTTACCGGTT
ATTTCGGCCT CGGCCCCCTT CAAGGCCGGT GGCCGCCACG GTACTACCTC AGATGCCGAC
CAGTACGTGC AGGTGGACAA GGGCGCGTTA ACCTTTAAAA ATGCCGCCGA CCTTTACCTC
TACCCCAACA CCATGGTGGC GGTAAAAGCG ACAGGCGCCG AGCTGAAAGA CTGGCTCGAG
TGCTCAGCCA ATCAGTTCAA CCAAATTGAC CCAAACAAGA GCGAGCCGCA GTTCCTCATC
AACTGGGCAG GTCACCCTAC CTACAACTTC GATGTGCTGG ACGGCATGAC CTACAAGATT
GACGTCACCC AACCGAGCAA GTTCGACCGT GACTGCAAAG TGGTGAATGA AAACGCCAAT
CGTATTGTGG ATCTGGCCTT TAAAGACAGC GATGGCAAGG TATACAGTGG CGAAGAGCTG
CTGACCAAAG AGTTCATTGT TGCCTCCAAC AACTACCGCG CCTTCGGTGG CAAGTTTGCC
GGTACCGGCA GTGACCACGT GGTGCTGGAG CTGCCAGATA CCAACCGTGA AGCACTGGCT
GCCTACATCA CCGCCGAGTC AAAATACAAT GAAACCACCG GCAAGTACGA CGGCATGGTT
AACCCTACCG CCGACTACAA CTGGGATTTT GTGACCATCA ATAGCGCTGT GACGCTGGAT
GTGCGTTTCG AAACCCAGGA CAGCGGCAAG GCCGATGCCT TTATCGAGCA AAACAAACAG
CGCCCCATGA CCAAGGTCGG CAAAGACGAG CTGGGTTATG CTGTGTATCG TATCGACCTG
ACCAAGTAA
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| Protein sequence | MERAHRGAPG VNISRDTDMN QKHLLAVTIA AALGVSACGS DNNDVEKEVL VDLRVMETTD
LHTNIMDFNY YSGKEDPTIG LARTASLIKA AAHEAPNHVL VDNGDLLQGS PMGDYMAKIG
IAEGAVHPAY KAMNLLGYSV GNIGNHEFNY GLDFLEKSLA GAEFPYINAN VYCADDNGCW
KGIKKGEHLF TPYLIEEKEV IDQNGDKHVI KIGYIGFVPP QIMLWDKQNL TGKVEPADIL
ETAQKYVPEM KAKGADIIIA IPHSGIGSVE NPGDPMAENA TYALTRVEGI NAIMFGHSHS
IFPDARYSDL PNTDVEKGLL NGVAAVMPGR WGDNLGVVDF KLARKDGKWA VLDVKTEARP
IYDGANKAPL VDADKDIHDA VELEHQGTLA FVDEPIGVAA ADMYSFLTLV QDDPTVQIVS
DAQIANVKAK LPSSLAHLPV ISASAPFKAG GRHGTTSDAD QYVQVDKGAL TFKNAADLYL
YPNTMVAVKA TGAELKDWLE CSANQFNQID PNKSEPQFLI NWAGHPTYNF DVLDGMTYKI
DVTQPSKFDR DCKVVNENAN RIVDLAFKDS DGKVYSGEEL LTKEFIVASN NYRAFGGKFA
GTGSDHVVLE LPDTNREALA AYITAESKYN ETTGKYDGMV NPTADYNWDF VTINSAVTLD
VRFETQDSGK ADAFIEQNKQ RPMTKVGKDE LGYAVYRIDL TK
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