Gene Sama_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1562 
Symbol 
ID4603814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1902081 
End bp1902584 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content51% 
IMG OID639780918 
Productferrichrome-binding protein 
Protein accessionYP_927439 
Protein GI119774699 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1670] Acetyltransferases, including N-acetylases of ribosomal proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATAT CCTTTGAGAC TCAAAGACTG AGCGTGATTG AAATCACCAA TGGCGTTGCT 
TGGTCTGAAC GCTCCGACTT ACTGGAGCGA GTGCCCGCAA TTTTAACCCC GGCAGTAGTT
GAAAATCTTC CCCCCTACTT CCACGGCGTC GCATCTCCCG GTTCGGCAAG TATGTGGCTT
GAACGTACGT TGCGAGACAG CCGGTTACTC CAGATCAACG CCCAAACGCG CGAAATAATA
GGTTTCCTCT TTATCCACGT AGAGAACGAA CACCATGCCC ACATCGGCTA TTTGCTGGCA
CAGGAGTATT GGGGCAAAGG CCTGGCCACT GAATTACTGC AGGGATTCAT TCGCGCAGCG
GCCAACAAAG AGTCATGGTT AACCCTTGTT GGCGGCGTTG AGCAGACCAA TACGGCATCA
GCAAAATTGC TTGAAAAGTT GGGCTTTACC GCCCAATCCC AGGGTGAAAA CAGCCAGGTA
TTTTATGAGT ATCGGCTCTC TTAA
 
Protein sequence
MTISFETQRL SVIEITNGVA WSERSDLLER VPAILTPAVV ENLPPYFHGV ASPGSASMWL 
ERTLRDSRLL QINAQTREII GFLFIHVENE HHAHIGYLLA QEYWGKGLAT ELLQGFIRAA
ANKESWLTLV GGVEQTNTAS AKLLEKLGFT AQSQGENSQV FYEYRLS