Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1554 |
Symbol | |
ID | 4603806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1891393 |
End bp | 1893582 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639780909 |
Product | GGDEF domain-containing protein |
Protein accession | YP_927431 |
Protein GI | 119774691 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00526113 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCATATT TTTTTTCAGC ATCGCCGCCA CGCACTGCGA TCATATTGGC TTTTTGCGGC TTCTTACTGA ACCTATATCC GCTGCCCCTG TTTGCCAATG TACAGCTGAT TTTGGGTAAT GCTGCCTATG TGATTGCCGC GGTAGTATTG GGACCGCGCT ATGCCGTCGC CGTGGCTCTG TCCTGCGCAG CAGGCTTGTT TATGATTTGG GGGACTACAC ATGTATTTGT CCTCTTCCCC CTCGAGGCCC TGGTGTTGGC CATGGCCACG AGACGCGGTA TTTACTCCCT TTATGCCGGT GTGGGTTTCT GGCTGCTGAT TGGTACCCCA CTGTTTTACC TTTACGGCCT CACGTTAACT TCGTTGCCTG TAAGTCACCT GCCCTTCATC GCCTTTAAAC AAGCAATCAA CGGTTTGTTT TACATTGGTT TGGGCGCCGT GTTGCTGTTG ATGTTACCTA AACTGACGCT GAGCGGTATC AGTCATCCGA AGACTCCAGA ACGTTTCAGC GATAAGTTAA CCTACAGCTT TACTCTGTTT ATTTCTCTGG CAATGCTGAT CGCCGCCCTG TTGTTCAATC AGTTTTTTAT TGAGCGCCAG CAGCTGCTGA TCAAAAAGAA CCTCCAGAAC AATGCGTTAC ATTTGTCGCA ATTCACCTTC GATTACCTGC AGGAGCATCA GAGGGCCATC GCTCAGGGCG CCCAATGGCT GTCGATGATG GATGGCGGCT CGGAGAAACA GCAACATTGG CTCACTCTAT TCAACCATGG TTACCCTGCT TTTTTAACCA TGTTGATTGC CAATGAACGA GGCCATATCG TGGCCGCGAG CCCAGCCGCA CGCATGATGG ATGAAGCGAT TAAAAAAGGT GAATACAGCG TGGCCGACCG CCACTACTTT AAGGAAGCCT TTTATAACCA GACTCCCTTT GTTTCGCCGG TATTTATGGG CCGGGGTTTT GGCAGCGACC CCATAGTCGC TGTCAGTGCC CCAATATACA GCCAAGGCCG TCCGAGCCAT CCGTCAGGCA TTCTGGAAGG CTCCCTTGAT TTAAATCGAT TTGTGCTTAT CGACAAGCAA AACCGCCATC ATTCAGAACA ATACCTGCTG CTCACCGACG AAAACAACCG GGTGATTTAT GCATCGGCGC CACTGAATAT TACGGCACTG AGCGAGTTCG CGTCCGCCGA GAGTGGCCTT GAGTACCGCA CCAGTTTGCA GTTGATTAAC CTGCATGATT TAACCAATCC CAACCCCGAG TATATCTATG CTCAGGAGCC ATTGGCGAAT GGTTGGCGCC TCATGGTCTT AACGCCCTTC GCACCACTGA TGCAAATGGC CGAAACACAG TTTTTACGCA CCTGTATACT GCTCATTATC AGCATGGGAT TCAGCTTCTA TCTGGCCCGT TTGATAAGCC GGATGCTGAC CAGCCCCCTT GAAACCATTG CCCATGAATT CAATAGTCCC GGTAAGCAAT CCAAGCCACT GCCCGCCGAT GCCCCGGCCG AAGTACAGAC GCTCTATCAG AGCCTGAAAG CGAGTCAGCA GCAATTGCTG AGCTATCAGT TGGAGCTGGA AGAAAAGGTT GCCTTTCGCA CCTTTGAACT TGAAAAAGCC AATCAGAAAC TGCAGGCACT TGCCGAGCGC GACCCCCTGA CGGGTTTATA TAACCGGCGC TATACAACGG CAGGATTTGC ACCTTTACAA GCCATGTGTG AGCGCAGTGG TGAAGCCATC GCGGTGGTGA TCCTGGATCT CGATTTTTTT AAAGCCATCA ATGATAATCA CGGGCATCTG GCCGGGGATG AGTGTCTGCG TCAGGTAGCC ATTCTGCTTA CACAACACTT TAAACGGGAT TCTGATCTGG TTGCCCGTTA TGGCGGAGAA GAATTTTTAC TGATCCTGCC AATGACCAAT GCACTGAAGA TTGAGCATCA CCTCAACCTG CTGCGGGAGC AGTTGGCAAG GCATCCTGTG GTTCTGCCCG GCGCCCAAGA GCCCATTCAC CTGTCTGTTT CGGTCGGCGC CGCGGTGGCC AATGCCAGCT TCTCCGACAC TCTTGAAGCC TGGCTCAAAG TCGCCGATGA TAACCTCTAT CAGGCTAAAG CCGAGGGCCG TAATCGGGTG GTCTGTACCC TGATTAATGA CGAAATACCG AGACAACAGG TCATGGACCA TAAGCCATAG
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Protein sequence | MSYFFSASPP RTAIILAFCG FLLNLYPLPL FANVQLILGN AAYVIAAVVL GPRYAVAVAL SCAAGLFMIW GTTHVFVLFP LEALVLAMAT RRGIYSLYAG VGFWLLIGTP LFYLYGLTLT SLPVSHLPFI AFKQAINGLF YIGLGAVLLL MLPKLTLSGI SHPKTPERFS DKLTYSFTLF ISLAMLIAAL LFNQFFIERQ QLLIKKNLQN NALHLSQFTF DYLQEHQRAI AQGAQWLSMM DGGSEKQQHW LTLFNHGYPA FLTMLIANER GHIVAASPAA RMMDEAIKKG EYSVADRHYF KEAFYNQTPF VSPVFMGRGF GSDPIVAVSA PIYSQGRPSH PSGILEGSLD LNRFVLIDKQ NRHHSEQYLL LTDENNRVIY ASAPLNITAL SEFASAESGL EYRTSLQLIN LHDLTNPNPE YIYAQEPLAN GWRLMVLTPF APLMQMAETQ FLRTCILLII SMGFSFYLAR LISRMLTSPL ETIAHEFNSP GKQSKPLPAD APAEVQTLYQ SLKASQQQLL SYQLELEEKV AFRTFELEKA NQKLQALAER DPLTGLYNRR YTTAGFAPLQ AMCERSGEAI AVVILDLDFF KAINDNHGHL AGDECLRQVA ILLTQHFKRD SDLVARYGGE EFLLILPMTN ALKIEHHLNL LREQLARHPV VLPGAQEPIH LSVSVGAAVA NASFSDTLEA WLKVADDNLY QAKAEGRNRV VCTLINDEIP RQQVMDHKP
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