Gene Sama_1554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1554 
Symbol 
ID4603806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1891393 
End bp1893582 
Gene Length2190 bp 
Protein Length729 aa 
Translation table11 
GC content51% 
IMG OID639780909 
ProductGGDEF domain-containing protein 
Protein accessionYP_927431 
Protein GI119774691 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00526113 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCATATT TTTTTTCAGC ATCGCCGCCA CGCACTGCGA TCATATTGGC TTTTTGCGGC 
TTCTTACTGA ACCTATATCC GCTGCCCCTG TTTGCCAATG TACAGCTGAT TTTGGGTAAT
GCTGCCTATG TGATTGCCGC GGTAGTATTG GGACCGCGCT ATGCCGTCGC CGTGGCTCTG
TCCTGCGCAG CAGGCTTGTT TATGATTTGG GGGACTACAC ATGTATTTGT CCTCTTCCCC
CTCGAGGCCC TGGTGTTGGC CATGGCCACG AGACGCGGTA TTTACTCCCT TTATGCCGGT
GTGGGTTTCT GGCTGCTGAT TGGTACCCCA CTGTTTTACC TTTACGGCCT CACGTTAACT
TCGTTGCCTG TAAGTCACCT GCCCTTCATC GCCTTTAAAC AAGCAATCAA CGGTTTGTTT
TACATTGGTT TGGGCGCCGT GTTGCTGTTG ATGTTACCTA AACTGACGCT GAGCGGTATC
AGTCATCCGA AGACTCCAGA ACGTTTCAGC GATAAGTTAA CCTACAGCTT TACTCTGTTT
ATTTCTCTGG CAATGCTGAT CGCCGCCCTG TTGTTCAATC AGTTTTTTAT TGAGCGCCAG
CAGCTGCTGA TCAAAAAGAA CCTCCAGAAC AATGCGTTAC ATTTGTCGCA ATTCACCTTC
GATTACCTGC AGGAGCATCA GAGGGCCATC GCTCAGGGCG CCCAATGGCT GTCGATGATG
GATGGCGGCT CGGAGAAACA GCAACATTGG CTCACTCTAT TCAACCATGG TTACCCTGCT
TTTTTAACCA TGTTGATTGC CAATGAACGA GGCCATATCG TGGCCGCGAG CCCAGCCGCA
CGCATGATGG ATGAAGCGAT TAAAAAAGGT GAATACAGCG TGGCCGACCG CCACTACTTT
AAGGAAGCCT TTTATAACCA GACTCCCTTT GTTTCGCCGG TATTTATGGG CCGGGGTTTT
GGCAGCGACC CCATAGTCGC TGTCAGTGCC CCAATATACA GCCAAGGCCG TCCGAGCCAT
CCGTCAGGCA TTCTGGAAGG CTCCCTTGAT TTAAATCGAT TTGTGCTTAT CGACAAGCAA
AACCGCCATC ATTCAGAACA ATACCTGCTG CTCACCGACG AAAACAACCG GGTGATTTAT
GCATCGGCGC CACTGAATAT TACGGCACTG AGCGAGTTCG CGTCCGCCGA GAGTGGCCTT
GAGTACCGCA CCAGTTTGCA GTTGATTAAC CTGCATGATT TAACCAATCC CAACCCCGAG
TATATCTATG CTCAGGAGCC ATTGGCGAAT GGTTGGCGCC TCATGGTCTT AACGCCCTTC
GCACCACTGA TGCAAATGGC CGAAACACAG TTTTTACGCA CCTGTATACT GCTCATTATC
AGCATGGGAT TCAGCTTCTA TCTGGCCCGT TTGATAAGCC GGATGCTGAC CAGCCCCCTT
GAAACCATTG CCCATGAATT CAATAGTCCC GGTAAGCAAT CCAAGCCACT GCCCGCCGAT
GCCCCGGCCG AAGTACAGAC GCTCTATCAG AGCCTGAAAG CGAGTCAGCA GCAATTGCTG
AGCTATCAGT TGGAGCTGGA AGAAAAGGTT GCCTTTCGCA CCTTTGAACT TGAAAAAGCC
AATCAGAAAC TGCAGGCACT TGCCGAGCGC GACCCCCTGA CGGGTTTATA TAACCGGCGC
TATACAACGG CAGGATTTGC ACCTTTACAA GCCATGTGTG AGCGCAGTGG TGAAGCCATC
GCGGTGGTGA TCCTGGATCT CGATTTTTTT AAAGCCATCA ATGATAATCA CGGGCATCTG
GCCGGGGATG AGTGTCTGCG TCAGGTAGCC ATTCTGCTTA CACAACACTT TAAACGGGAT
TCTGATCTGG TTGCCCGTTA TGGCGGAGAA GAATTTTTAC TGATCCTGCC AATGACCAAT
GCACTGAAGA TTGAGCATCA CCTCAACCTG CTGCGGGAGC AGTTGGCAAG GCATCCTGTG
GTTCTGCCCG GCGCCCAAGA GCCCATTCAC CTGTCTGTTT CGGTCGGCGC CGCGGTGGCC
AATGCCAGCT TCTCCGACAC TCTTGAAGCC TGGCTCAAAG TCGCCGATGA TAACCTCTAT
CAGGCTAAAG CCGAGGGCCG TAATCGGGTG GTCTGTACCC TGATTAATGA CGAAATACCG
AGACAACAGG TCATGGACCA TAAGCCATAG
 
Protein sequence
MSYFFSASPP RTAIILAFCG FLLNLYPLPL FANVQLILGN AAYVIAAVVL GPRYAVAVAL 
SCAAGLFMIW GTTHVFVLFP LEALVLAMAT RRGIYSLYAG VGFWLLIGTP LFYLYGLTLT
SLPVSHLPFI AFKQAINGLF YIGLGAVLLL MLPKLTLSGI SHPKTPERFS DKLTYSFTLF
ISLAMLIAAL LFNQFFIERQ QLLIKKNLQN NALHLSQFTF DYLQEHQRAI AQGAQWLSMM
DGGSEKQQHW LTLFNHGYPA FLTMLIANER GHIVAASPAA RMMDEAIKKG EYSVADRHYF
KEAFYNQTPF VSPVFMGRGF GSDPIVAVSA PIYSQGRPSH PSGILEGSLD LNRFVLIDKQ
NRHHSEQYLL LTDENNRVIY ASAPLNITAL SEFASAESGL EYRTSLQLIN LHDLTNPNPE
YIYAQEPLAN GWRLMVLTPF APLMQMAETQ FLRTCILLII SMGFSFYLAR LISRMLTSPL
ETIAHEFNSP GKQSKPLPAD APAEVQTLYQ SLKASQQQLL SYQLELEEKV AFRTFELEKA
NQKLQALAER DPLTGLYNRR YTTAGFAPLQ AMCERSGEAI AVVILDLDFF KAINDNHGHL
AGDECLRQVA ILLTQHFKRD SDLVARYGGE EFLLILPMTN ALKIEHHLNL LREQLARHPV
VLPGAQEPIH LSVSVGAAVA NASFSDTLEA WLKVADDNLY QAKAEGRNRV VCTLINDEIP
RQQVMDHKP