Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1551 |
Symbol | |
ID | 4603803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1887992 |
End bp | 1888819 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780906 |
Product | AraC/XylS family transcriptional regulator |
Protein accession | YP_927428 |
Protein GI | 119774688 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0639275 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACAGG AAATTATTGA TTTCAGGCAA AGTCAGTCGC TGGCAGGTGC TGAGCTCAGT CGCGCCTCTT ATCAACGCTT TGACTTTGGT CGTCATGTCC ATGAAGACCT GCACCTGGGC GCAGTTATCC GCGGGGCTCA GGCGTTCAAT CACAAGGGTA CCGGACACAC CCTTTGCCGG GGGGATTTGT CGACCTTAAG CCCGGACGAA TGCCACGATG GGATTGCGGC GACAGACACG GGCTATGAAG TGCTGGTGTT GTCCCTGCCC CAATGGCATC TGGACCGGTT TGCCGCAGAG CTTGGCATAA GCTTTGGTGG ATTTTGTCAG CCAAAGCGTA AAGATATGGC GCTTTATCAG GCCTTTGTGT CCCTGCATCG GCTGCTTTAT CAAGCCGAAA ATCCCCTGTT GGAAGAAACC GCATTGCTGG ACTTCTTTCA ACGCCTGCTG GGACAATGCT CCAAGTCTGA AAAAGTCACC AACACAGGCA CTGTCAAAGC CGGATTAAGC CGCGAAATTC GTCTTGCAAA ATCACTGATG GCCGACACCC CAGAGCCGGT GACACTTGAG CTTCTCGGGG ATGCAACAGG GCTCGGTCGC TACCGGTTAC TACGCCATTT CAGGGCTCAA ACCGGGCTCA GTCCCCATCA ATGGCAACTA AGACTAAGGC TTGAGCGGGC CAAAAAAAGT CTGATGCAAA ATGATGGTAA TTCGCTGACC GACATTGCCC ATCAGCATGG CTTCAGCGAC CTTAGCCACT TTACTCGCCA CTTTCGCATG GCCTTTTTAA CGTCACCCAG CGCCTATCGT CGCGCTATCA GGAATTAA
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Protein sequence | MQQEIIDFRQ SQSLAGAELS RASYQRFDFG RHVHEDLHLG AVIRGAQAFN HKGTGHTLCR GDLSTLSPDE CHDGIAATDT GYEVLVLSLP QWHLDRFAAE LGISFGGFCQ PKRKDMALYQ AFVSLHRLLY QAENPLLEET ALLDFFQRLL GQCSKSEKVT NTGTVKAGLS REIRLAKSLM ADTPEPVTLE LLGDATGLGR YRLLRHFRAQ TGLSPHQWQL RLRLERAKKS LMQNDGNSLT DIAHQHGFSD LSHFTRHFRM AFLTSPSAYR RAIRN
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