Gene Sama_1551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1551 
Symbol 
ID4603803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1887992 
End bp1888819 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content53% 
IMG OID639780906 
ProductAraC/XylS family transcriptional regulator 
Protein accessionYP_927428 
Protein GI119774688 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0639275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACAGG AAATTATTGA TTTCAGGCAA AGTCAGTCGC TGGCAGGTGC TGAGCTCAGT 
CGCGCCTCTT ATCAACGCTT TGACTTTGGT CGTCATGTCC ATGAAGACCT GCACCTGGGC
GCAGTTATCC GCGGGGCTCA GGCGTTCAAT CACAAGGGTA CCGGACACAC CCTTTGCCGG
GGGGATTTGT CGACCTTAAG CCCGGACGAA TGCCACGATG GGATTGCGGC GACAGACACG
GGCTATGAAG TGCTGGTGTT GTCCCTGCCC CAATGGCATC TGGACCGGTT TGCCGCAGAG
CTTGGCATAA GCTTTGGTGG ATTTTGTCAG CCAAAGCGTA AAGATATGGC GCTTTATCAG
GCCTTTGTGT CCCTGCATCG GCTGCTTTAT CAAGCCGAAA ATCCCCTGTT GGAAGAAACC
GCATTGCTGG ACTTCTTTCA ACGCCTGCTG GGACAATGCT CCAAGTCTGA AAAAGTCACC
AACACAGGCA CTGTCAAAGC CGGATTAAGC CGCGAAATTC GTCTTGCAAA ATCACTGATG
GCCGACACCC CAGAGCCGGT GACACTTGAG CTTCTCGGGG ATGCAACAGG GCTCGGTCGC
TACCGGTTAC TACGCCATTT CAGGGCTCAA ACCGGGCTCA GTCCCCATCA ATGGCAACTA
AGACTAAGGC TTGAGCGGGC CAAAAAAAGT CTGATGCAAA ATGATGGTAA TTCGCTGACC
GACATTGCCC ATCAGCATGG CTTCAGCGAC CTTAGCCACT TTACTCGCCA CTTTCGCATG
GCCTTTTTAA CGTCACCCAG CGCCTATCGT CGCGCTATCA GGAATTAA
 
Protein sequence
MQQEIIDFRQ SQSLAGAELS RASYQRFDFG RHVHEDLHLG AVIRGAQAFN HKGTGHTLCR 
GDLSTLSPDE CHDGIAATDT GYEVLVLSLP QWHLDRFAAE LGISFGGFCQ PKRKDMALYQ
AFVSLHRLLY QAENPLLEET ALLDFFQRLL GQCSKSEKVT NTGTVKAGLS REIRLAKSLM
ADTPEPVTLE LLGDATGLGR YRLLRHFRAQ TGLSPHQWQL RLRLERAKKS LMQNDGNSLT
DIAHQHGFSD LSHFTRHFRM AFLTSPSAYR RAIRN