| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1533 |
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| Symbol | |
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| ID | 4603785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1863740 |
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| End bp | 1865026 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780883 |
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| Product | D-amino-acid dehydrogenase |
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| Protein accession | YP_927410 |
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| Protein GI | 119774670 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000097225 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAACTA ATCCAATGAA GATAAACGCT GGGACCCCCG ATTCTGTCAA CCAACAGGTG
ATAGTGATAG GTGCGGGTGT GATTGGGCTT GCCAATGCCG TTACGCTCGC CAGAAGAGGC
TTTAAAGTTA CCGTAATAGA CAAAGAGGGC GTCGCCGCCG GTGCATCCTT CGGCAATGCC
GGGCATTTTG CCACGGAGCA GGTATTCCCC CTGGCCGATC CGTCCTTGTT GCCAAAGTTA
CCCAAAATGT TGCTCGATCC ACTTGGGCCT TTTCGCATTC GCCCGGCGTA TTTCCATCGG
GCGCTGCCTT GGTTTGTGCG TTTTATCGTA AATATGATGC CCGCAAGGCG CCAACATAAT
GGTAATGCAA TTAAGGCGCT TAATGCCCGG TCGATGGCGG CCACCAAAGA ACTGCTGACG
TTTTGTGGCC GGGCGGATTT GCTGGTGGAA AATGGCTCCT TACTGGTATT TGAAACCCAA
GACCCGAGAG TTATGGAGCA GGAGCTGGCG CTCTACAACG ACGCCGGGAT TGCGGTCAGG
TTACTAAGTG GTGATGAAGC AAGGGCGCTG GAGCCTGACT TATCCGATGC TATCAGCGGA
GCGCTGTGGT TTACAGAAGT TGGGCATACG CCCAATCCAA GGGCTATTTG CGAAGCCTTG
GCAGATACCC TGAAGGCCTT GGGGGGACGG ATTGAAATAG ATTCGGTCTG CTCATTACAA
GGTGGGAATA CGCCCTCAGT AACCACTGAA ACTGGTAAGG TCACAAAAGC CGATAAACTG
CTTCTTTGCG CGGGCGCCTG GTCACGGCCA TTGGCGTTGA AGCTCGGTCA CAGGGTGCCG
CTGGAAACAG AGCGGGGTTA TCACCTGATG ATGCCCCAGC ACAGTGGGCT GAAAAGGCCC
GTTGCATCCT ATGAGCGCAA GTTCATCATA ACCCCCATGG AAGATGGTAC ACGTCTTGCT
GGAACCGTGG AATTTGGTGG GCTGAATGCT CCAATGTCCA ATGCCCGTGC TGATTGCCTG
CTGCCACACG CCAGGGTGCT CTTACCCAAG GTGTTTGCGA CAGCCAGGGT TTCAGAAGGT
AAGCGCTGGA TGGGATTCAG GCCATCACTG CCGGACAGTT TGCCCGTCCT GGGCGAAAGC
CAAACTCCGG GCGTCTACTT TGCTTTCGGG CATCAGCACC TCGGACTCAC CTGGGCTGCG
AGCAGCGCCG AGCTGCTGGG GCAGTTGATA TGTGGCGAGA CTCCGTCCAT CGATTTGAGC
CCCTACTGTG TGAAGCGGTT CGACTGA
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| Protein sequence | MKTNPMKINA GTPDSVNQQV IVIGAGVIGL ANAVTLARRG FKVTVIDKEG VAAGASFGNA
GHFATEQVFP LADPSLLPKL PKMLLDPLGP FRIRPAYFHR ALPWFVRFIV NMMPARRQHN
GNAIKALNAR SMAATKELLT FCGRADLLVE NGSLLVFETQ DPRVMEQELA LYNDAGIAVR
LLSGDEARAL EPDLSDAISG ALWFTEVGHT PNPRAICEAL ADTLKALGGR IEIDSVCSLQ
GGNTPSVTTE TGKVTKADKL LLCAGAWSRP LALKLGHRVP LETERGYHLM MPQHSGLKRP
VASYERKFII TPMEDGTRLA GTVEFGGLNA PMSNARADCL LPHARVLLPK VFATARVSEG
KRWMGFRPSL PDSLPVLGES QTPGVYFAFG HQHLGLTWAA SSAELLGQLI CGETPSIDLS
PYCVKRFD
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