| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1523 |
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| Symbol | |
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| ID | 4603775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1851761 |
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| End bp | 1853479 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780873 |
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| Product | sodium/solute symporter family protein |
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| Protein accession | YP_927400 |
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| Protein GI | 119774660 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTTA AAACTCTGAC ATACCTGATT GTGGGGCTCT CATTTGCCCT CTATATCGGT
ATCGCGATTT GGTCCCGTGC CGGTTCGACC AAAGAATTCT ACGTAGCCGG TGGCGGTGTT
CCCCCTGTGA TGAACGGTAT GGCCACTGCG GCCGACTGGA TGTCTGCGGC GTCTTTTATC
TCTCTGGCCG GTATCGTGTC CTTCGTGGGC TATGACGGCT CCGTATACCT GATGGGCTGG
ACCGGTGGTT ATGTGCTGCT GGCGCTCTGT ATGGCTCCGT ATCTTCGTAA GTTTGGTAAG
TTTACCGTAC CTGACTTCAT CGGTGAGCGT TACTACTCTC AGGCGGCGCG CACTGTGGCC
GTGGTCTGTG CCATCTTCAT CTGCTTTACC TATATTGCAG GTCAAATGCG CGGTGTGGGC
GTGGTGTTCT CCCGCTTCCT TGAAGTGGAC GTGGATACCG GCGTATACAT TGGTATGGCC
GTGGTGTTCT TCTACGCTGT ACTCGGCGGC ATGAAAGGTA TCACCTACAC CCAGGTGGCC
CAGTACTGCG TGCTTATCTT CGCCTTTATG GTGCCCGCCA TCTTCATCTC TGTGATGATG
ACTGGTCACA TCATTCCTCA GCTGGGTTTC GGTGCCGAGC TGATTGATGC TGCCGGTAAC
GGAACAGGTG TGTATCTGCT GGATAAGCTC GATGGTCTGT CTACCGAACT GGGTTTCTCC
CAGTACACTG AAGGCTCCAA GAGCATGATT GACGTGTTTG CAATCACTGC GGCCCTGATG
GTGGGAACTG CCGGTTTGCC ACACGTTATC GTACGCTTCT TTACCGTTCC TCGCGTAAAA
GATGCCCGTT CAAGTGCCGG TTGGGCGCTG GTGTTCATTG CTATCATGTA CACCACAGTG
CCAGCTCTGG CAGCCTTCTC ACGCGTGAAC ATGATTGAAA CCATTAACGG TCCGGATTCC
ACTGGTGTGG CGTATGAGAC CGCACCGGGT TGGATTAAAA ACTGGGAAAA GACCGGTCTT
ATCAAGTGGG ACGACAAGAA CGGCGATGGC AAGATGTACT ACACCAAGGG CGATGCCAAC
GAGATGAACA TCGACCGTGA CATCATGGTG TTGGCGACCC CTGAAATTGC CAATCTGCCA
GCCTGGGTAA TCGCTCTGGT GGCTGCCGGT GGTCTGGCTG CGGCCTTGTC TACTTCTGCC
GGTCTCTTGT TGGTGATTTC AACCTCAGTA TCCCACGACC TGATGAAGAA AGGCTTTGCC
CCCAATATCT CGGATAAGCA AGAGCTGCTC TACGCCCGTA TTGCTGCGGC AGTGGGTATC
GTGATTGCCG GTTACTTTGG TATCAACCCA CCCGGATTCG TGGCAGCAGT AGTTGCGTTC
GCCTTCGGTC TGGCTGCATC TTCACTGTTC CCCGCCATTG TGATGGGTAT CTTCTCCAAG
AAGATGAACA AAGAAGGCGC CATCGCCGGT ATGGTGGTTG GTTTGGGCTT TACTGCGGCT
TACATCGTTT ACTTCAAGTT TGTAAACCCT GCGGCTAACG TGCCTGCCAA CTGGCTGTTC
GGGATCTCCC CTGAAGGTAT CGGTATGATT GGTATGCTGA TTAACTTTGC TGTAGCGGTT
ATTGTCGCCA AGCTGACGTC TGCCGTACCT GCCCATGTGG AAGAAATGGT TGAAGGTATC
CGTTTCCCTA AAGGTGCCGG TGGCGCACAG GATCACTGA
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| Protein sequence | MDVKTLTYLI VGLSFALYIG IAIWSRAGST KEFYVAGGGV PPVMNGMATA ADWMSAASFI
SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFIGER YYSQAARTVA
VVCAIFICFT YIAGQMRGVG VVFSRFLEVD VDTGVYIGMA VVFFYAVLGG MKGITYTQVA
QYCVLIFAFM VPAIFISVMM TGHIIPQLGF GAELIDAAGN GTGVYLLDKL DGLSTELGFS
QYTEGSKSMI DVFAITAALM VGTAGLPHVI VRFFTVPRVK DARSSAGWAL VFIAIMYTTV
PALAAFSRVN MIETINGPDS TGVAYETAPG WIKNWEKTGL IKWDDKNGDG KMYYTKGDAN
EMNIDRDIMV LATPEIANLP AWVIALVAAG GLAAALSTSA GLLLVISTSV SHDLMKKGFA
PNISDKQELL YARIAAAVGI VIAGYFGINP PGFVAAVVAF AFGLAASSLF PAIVMGIFSK
KMNKEGAIAG MVVGLGFTAA YIVYFKFVNP AANVPANWLF GISPEGIGMI GMLINFAVAV
IVAKLTSAVP AHVEEMVEGI RFPKGAGGAQ DH
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