| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1516 |
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| Symbol | |
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| ID | 4603768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1844244 |
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| End bp | 1846289 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780866 |
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| Product | DNA ligase (NAD(+)) |
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| Protein accession | YP_927393 |
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| Protein GI | 119774653 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000678531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCC CCGCGCATTT CCAAGGTACC ATCATGCAAG TCAAAGCCGA AATTCAACGT
CTTACCGCTG AAATCAATCG TCACAACATC GCCTACTATG TGCAGGATGC GCCAAGCATT
CCCGATGCGG AATACGACCG GCTGATGAAC CAGCTCAAAG CGCTGGAAGC CGAGTACCCA
CAGTTTGCCG AGCCCGACTC GCCCACCCAG CGTGTGGGCG GCGCAGCACT GAATAAATTT
GAACAGGTCA GCCACTTGAA ACCCATGCTG AGCCTGGATA ATGCCTTTAA TGAAGAAGAC
TTCGTCGCCT TCGATAAGCG CCTGACCGAT AAGGTGGGCT CCCAGGTGTA CTGCGCCGAG
CCTAAACTCG ACGGCCTCGC GGTGAGCCTG ATTTACCGTA ACGGTGTGCT TGAGCGTGCC
GCTACCCGTG GAGATGGCGC CGTCGGGGAA GATATCAGCG TCAATATGCG CACCATCAAG
TCGGTACCAC TGAGACTGCA GGGCGATGAT ATTCCGGCAT TGGTGGAGGT GCGGGGAGAG
GTCTTTATGC CAAGGGCCGC CTTTGAAGCG CTGAATGACC GCGCCCGTGC AAAGGGTGAC
AAGCTCTTCG TCAATCCCCG TAACGCCGCC GCGGGCAGCT TGCGTCAGCT CGACAGCAAG
ATAACCGCCG AGCGCTCACT GGCATTTTAT GCCTATGCGC TGGGTGTGGT GCAGGACGAC
AATGGTGCCG ATTTGGTGCT GGCGCCCACC CACAAAGGCC AACTCGAGCG CCTTACAGCC
TTCGGTTTGC CGGTGAGCAA GGAAGTGAAG CTCTGTGAAG GCCTTGCAGA GGTGATGGCC
TACTATGCGG ATATCCTTAA ACGCCGTGAC GAGCTTGCCT TTGAAATCGA TGGCGTGGTG
ATTAAGGTGA ACGACATCGA AGCCCAGCAG CAGCTCGGGT TTGTGGCCCG TGCGCCGCGC
TGGGCTATCG CCTTTAAGTT TCCTGCACAG GAAGAGATGA CTGTGCTCGA AGGCGTTGAT
TTTCAGGTGG GTCGTACCGG CGCCGTGACC CCTGTAGCCC GCTTAAAACC TGTGTTTGTG
GGCGGTGTGA CCGTATCCAA TGCGACTTTG CACAACGGTG ATGAAATTGC CCGCCTTGGG
GTGAAGATTG GCGATACCGT GATTATTCGC CGCGCCGGTG ATGTGATCCC GCAAATTGTG
GCTGTGGTGC CTGAGCGCCG TCCTGATGAG GCGCAGGATA TCCTGTTCCC GGACAATTGC
CCTGTCTGCG GCTCGCTGGT GGAGCGCATT GAAGGCGAGG CGGTGGCCCG CTGCAGCGGC
GGGCTTTTCT GTGAAGCCCA GCGCCGGGAG GCCATCAAGC ACTTTGCATC CCGAAAGGCC
ATGTATATCG ATGGCATGGG CGACAAGGTG GTTGAGCAGC TTATTGATAA AGAGCTGGTG
GAAAGCCCGG CGGATCTCTT TAAGCTCAAT GTGTCAAAGC TGACCATGCT TGAGCGCATG
GGCACCAAGT CGGCCACCAA TCTGGTGGCG GCCATTGAAG AAGCCAAAAC CACCACCTTA
CCCAAGTTCC TCTATGCACT GGGTATTCGG GAAGTAGGGG AGGCCACGGC CGCCAACCTG
GCGAAGCACT TTCGAAGCCT CGAAGCCATC AGGGACGCCG ATGTGGACGC CCTGATACAG
GTAGAAGATG TGGGTACAGT GGTTGCTCAG CACGTGGCGC ACTTTTTTGC CCAGCCCCAT
AACCTTGAGG TGATAGATGC GCTGATCGCG GCCGGGGTAA ACTGGCCTGC CATCGAAAAG
CCATCCGCCG ATGCACAGCC GCTGCTGGGC CAAACCTGGG TGCTCACGGG GACGCTCACC
AGTCTTGGCC GCACCGAGGC CAAGGCCAAG CTTGAGGCCC TTGGTGCCAA GGTGGCTGGC
AGTGTGTCCA AGAATACCCA CTGCGTAGTT GCCGGTGAAG CGGCGGGCTC CAAGCTTGCC
AAGGCCCAGG AGTTGGGTAT CCCGGTATTG GATGAAGCTG GTCTGATTGA GCTGATAGGC
CTCTGA
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| Protein sequence | MSGPAHFQGT IMQVKAEIQR LTAEINRHNI AYYVQDAPSI PDAEYDRLMN QLKALEAEYP
QFAEPDSPTQ RVGGAALNKF EQVSHLKPML SLDNAFNEED FVAFDKRLTD KVGSQVYCAE
PKLDGLAVSL IYRNGVLERA ATRGDGAVGE DISVNMRTIK SVPLRLQGDD IPALVEVRGE
VFMPRAAFEA LNDRARAKGD KLFVNPRNAA AGSLRQLDSK ITAERSLAFY AYALGVVQDD
NGADLVLAPT HKGQLERLTA FGLPVSKEVK LCEGLAEVMA YYADILKRRD ELAFEIDGVV
IKVNDIEAQQ QLGFVARAPR WAIAFKFPAQ EEMTVLEGVD FQVGRTGAVT PVARLKPVFV
GGVTVSNATL HNGDEIARLG VKIGDTVIIR RAGDVIPQIV AVVPERRPDE AQDILFPDNC
PVCGSLVERI EGEAVARCSG GLFCEAQRRE AIKHFASRKA MYIDGMGDKV VEQLIDKELV
ESPADLFKLN VSKLTMLERM GTKSATNLVA AIEEAKTTTL PKFLYALGIR EVGEATAANL
AKHFRSLEAI RDADVDALIQ VEDVGTVVAQ HVAHFFAQPH NLEVIDALIA AGVNWPAIEK
PSADAQPLLG QTWVLTGTLT SLGRTEAKAK LEALGAKVAG SVSKNTHCVV AGEAAGSKLA
KAQELGIPVL DEAGLIELIG L
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