Gene Sama_1474 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1474 
Symbol 
ID4603726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1783169 
End bp1784260 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content57% 
IMG OID639780824 
Producthypothetical protein 
Protein accessionYP_927351 
Protein GI119774611 
COG category[S] Function unknown 
COG ID[COG4984] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGGAA ACGCAGCGCC ACCCGATAAA CCCACTGGTG TGGAGTCCAA ACTTTTTCCG 
GCGTCTCCCT CTGTTCGTGC CCAGTTGGCA CAGTGGCTCG ATGACGGATA TTTGCGCAAG
GGAGCCCTGT CGCAATTGCC CCCGCTGGTG GAAGCCTGTG AGTCCCGGGC TCCACAAAAC
TGGTTAACGC CGCTTTACAC CATGATGCTG TACCTGGGCG CCTTGTTGCT GGGGGCCGGG
ATCATTTTCT TTTTTGCCTA CAACTGGGCG AATCTGCACC ACTTTGCCAA ATTTGTCCTG
GTGGAAACGG CCATCGCATT TACTGTGTGC GGGCTGTATC CGGTGAGTCG GTTAGCGCCG
GGAAGACAGG TGTTTCACTG GCTTACGGGG GCCCTGTTAC TGCTGCTGGA CCTGTTGGTG
GGCGCCCTGT TGGCGCTGGT GGGGCAGGTG TATCAAACCG GCGCCGATCC CTGGCAGCTC
TTTGCCATTT GGGCTGCCTT TACCTTGTTG CCCGCACTGG TATATCGCAG CGATTTGCTC
TGGAGCGCCT TTTGGGCCCA GAGCAATCTG GCGCTGTGGC TTCATTTTGC CCATCTTGGT
GCCATCTTGG GCATTGTGGT TGATGTCGGT TGGGCGATGC TCATTATTGC TGTCTGTAAC
CTGGGCCTGC ACTGGCTACT TGAAGTCGGA CAAAGACGCA AGTTGCCCGT TTTTGCCCAT
ACGTTCACCA ATACGCTTGC CCTTACGGCG GGGGTGACCG GCCTTGCCTG GTACGGCGCT
TATCACATCC TGGATACCCG CCTTGGCTGG CAACATGGTG CGCTCTTGGT GGCACTGCTG
GCGCTGGTGC CGCTGATTTA TCTTGTTTAC CGCAGATGGT GCCTGAGGAT TACGGCGCTT
GGCATATGGG GATTTGTCGT TATCGCCGAG TCGAGCATCT TGCTTGCGCG GGTTCTGTTT
GAGGGCAGCG AGCCGGTGGG GAGTTTCTTG CTGGTGGGCT GCTATGTGAT TGGCTGTAGC
AGCGGCCTTG CGATTTATCT CAAGGGTCTT CTTCGGGAGG AAAAGATGCA GGAGATGCAA
CATGGTGGAT AA
 
Protein sequence
MQGNAAPPDK PTGVESKLFP ASPSVRAQLA QWLDDGYLRK GALSQLPPLV EACESRAPQN 
WLTPLYTMML YLGALLLGAG IIFFFAYNWA NLHHFAKFVL VETAIAFTVC GLYPVSRLAP
GRQVFHWLTG ALLLLLDLLV GALLALVGQV YQTGADPWQL FAIWAAFTLL PALVYRSDLL
WSAFWAQSNL ALWLHFAHLG AILGIVVDVG WAMLIIAVCN LGLHWLLEVG QRRKLPVFAH
TFTNTLALTA GVTGLAWYGA YHILDTRLGW QHGALLVALL ALVPLIYLVY RRWCLRITAL
GIWGFVVIAE SSILLARVLF EGSEPVGSFL LVGCYVIGCS SGLAIYLKGL LREEKMQEMQ
HGG