| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1472 |
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| Symbol | |
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| ID | 4603724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1780940 |
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| End bp | 1782193 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780822 |
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| Product | ABC transporter permease protein |
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| Protein accession | YP_927349 |
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| Protein GI | 119774609 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.932359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCAGG ATACTTTTAA TCAATATCGG GCGGGCGTGG TACAAGCATT GGGTGAGATG
CTGCACCACA AGTTACGCAC GGCGCTGACA CTGCTGGGGA TGATTTTTGG GGTAGGAGCG
GTGATTGCCA TGCTCAGCGT GGGCGAAGGT GCCGAACGCG AAGCTCTTAA GATGATTGAG
TCCATGGGGA TTAAAAATCT GGTGGTCAAT GCGCGCCCAT CGGAAGGAGA AGCCTTGAAA
ACTGTCCGCG AACACAGCAT TGGCCTTAGC CTGCGTGACA TCGAGAGTGC TATGGAAACC
CTGCCTTTTA TCGAGGCTTA CAGCGCCGGT AAGCAGGTGA AGGTGTTTGG GCTTTTCAGT
GTGCAGGGCC GCAGTGACGC GCTGGTGCAG GGCGTAACCC CCAGCTATTT TGATTTGAGC
GCCTTGAAAC TTGCCGAAGG TCGACTTCTG GGCGACGAAG ATGAACAGCA CTTCAGGCAA
TTGGCGGTAC TGGGGCCTGA AGCAGCCCGC AGCCTGTTCC CCCGGGGGGA TGCTGTTGGT
CAGCGCATCA AAATCAACCA TCAGTGGTTT ACCGTGGTTG GCGTGCTTGA TGAAGGCGAA
AAGGGCAAGT CGGCCATCGA AGGGGTTAAG GTGGGCGGCG AGCGTAATCA GGTGTTTATT
CCGCTGGCCA CTGCGCTGAA AAAAATGCAG TTCAAGCCCC TCGAAGATGA ACTCGATACC
ATCAAGTTTG CCCTGAAGGA GGGGATAGAC CCGTCTCTGG CGGCAAAAAG CGTGGAACAT
CTGCTGTCAC GTCGTCATGG CAATGAGCAG GACTACGACA TAGTGGTACC GGCCGATCTG
CTTGCTCAGC ACCAGCGGAC CCAGCAAATT TTCAATATAG TGATGGCCTG TGTGGCGGGA
ATTTCGCTGC TGGTGGGGGG CATAGGGATC ATGAATATCA TGCTGGCCAC CATCTTGGAA
CGTACTTCCG AGATAGGTTT GCTGCGGGCG CTTGGTGCCA CTCAAAAAGA CATCGCCAGA
CAGTTTCTGA TAGAAAGCAT GGTGATTTCG GCCACCGGTG GCCTGATTGG TATTGGCGTG
GGGTTATTGC TGGCGTTGGT TATTTCGGCG GCGGCCGGTT GGCCCGTGGC ATGGTCTGTG
TTCGCCATTC TCCTGTCACT CTTGGTGTGT ATGGCTGTGG GGATAGGTTT CGGCCTGTAT
CCAGCCAAAA AGGCCGCCAG GCTCGACCCT ATTGTGGCAC TTCAGCGTGA CTGA
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| Protein sequence | MMQDTFNQYR AGVVQALGEM LHHKLRTALT LLGMIFGVGA VIAMLSVGEG AEREALKMIE
SMGIKNLVVN ARPSEGEALK TVREHSIGLS LRDIESAMET LPFIEAYSAG KQVKVFGLFS
VQGRSDALVQ GVTPSYFDLS ALKLAEGRLL GDEDEQHFRQ LAVLGPEAAR SLFPRGDAVG
QRIKINHQWF TVVGVLDEGE KGKSAIEGVK VGGERNQVFI PLATALKKMQ FKPLEDELDT
IKFALKEGID PSLAAKSVEH LLSRRHGNEQ DYDIVVPADL LAQHQRTQQI FNIVMACVAG
ISLLVGGIGI MNIMLATILE RTSEIGLLRA LGATQKDIAR QFLIESMVIS ATGGLIGIGV
GLLLALVISA AAGWPVAWSV FAILLSLLVC MAVGIGFGLY PAKKAARLDP IVALQRD
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