| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1431 |
|---|
| Symbol | |
|---|
| ID | 4603683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1742800 |
|---|
| End bp | 1743717 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780781 |
|---|
| Product | auxin efflux carrier |
|---|
| Protein accession | YP_927308 |
|---|
| Protein GI | 119774568 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0679] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00125479 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTAA TCGAAATCGT CTTCCCGCTG CTGTTTATCG CCGCGCTGGG CTATGGTGCC
TGCCGCAGTG GCTGGTTTAG CCGCGAGCAT ATCGCCGGCA TAAGCAAGTT CGCCTTTTAT
GTGTGTATTC CCGCACTGCT GTTTTCCGCC ATGCTGAAAG TACCACTTAA AGAGAGTATC
CGCTTACCGG TGCTGGCGGC CTTTTATATT CCAGTGGTGC TGAGCTTCGC CTTTACCTTG
TTGCTGGCCC ACCAAACCCT TAAACGCCCA TACCGAGACT GCGCCGTGCT TGCCCTCGGC
GGCAGCTACT CCAACACCTT GCTGGTGGGC TTGCCGGTGA TCATGGCTGC CTTCGGCCCT
GCGCAGATGG CAAGCGTGTT TTTAATTATT CCCTTTCACA GTGCGGTGTT GTTTGGGCTC
ACTTTTGCGC TGTCTGATAA TACGGAAGCC GAGGGTGGCA GCAGGGGCAC ACAGCTTATC
AAGGGGCTGC TGTTTAACCC TGTGGTGGCG AGTATCGGCC TTGGGCTTAT CGGTAACGTC
GCCGGGCTGA GCCTGCCGAC AGCCCTTGGC ACCAGCCTCG AAATGCTCGC CAAACCAGCC
ATTGCCTGTG CGCTCTTTGT GCTGGGTGCC AATTTGAATC AATATCGCCT CTCCAGTGCC
TTTGCTCTGA CGGCGGTGTT AAGTGCGATT AAGCTTATGC TGCTGCCCCT GCTTATCCTG
ATTGCGGGTA AGCTGCTTGG GCTTACCTCA CTGGAGCTTG CGGTAACAGT ACTGCTTGGC
GCATCGCCAC TTGGGGTGAA CGCCTACCTG ATTGCGGCGC AGCTTAAGCG CGACAGCGAC
ATCATTGCTG GCGCCGTGGT GCTGTCATCC ATGCTTTGTA TCCTCTCTGT GATCTTCTGG
TTAACTGTGT TAACGTGA
|
|---|
| Protein sequence | MSVIEIVFPL LFIAALGYGA CRSGWFSREH IAGISKFAFY VCIPALLFSA MLKVPLKESI
RLPVLAAFYI PVVLSFAFTL LLAHQTLKRP YRDCAVLALG GSYSNTLLVG LPVIMAAFGP
AQMASVFLII PFHSAVLFGL TFALSDNTEA EGGSRGTQLI KGLLFNPVVA SIGLGLIGNV
AGLSLPTALG TSLEMLAKPA IACALFVLGA NLNQYRLSSA FALTAVLSAI KLMLLPLLIL
IAGKLLGLTS LELAVTVLLG ASPLGVNAYL IAAQLKRDSD IIAGAVVLSS MLCILSVIFW
LTVLT
|
|---|
| |