| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1425 |
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| Symbol | sdhA |
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| ID | 4603677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1733843 |
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| End bp | 1735609 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780775 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_927302 |
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| Protein GI | 119774562 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00837732 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTTCGCGA GTTTGATGCA GTCGTGATTG GTGCCGGCGG TGCCGGTATG
CGCGCTGCAC TGCAGATTTC CAAAGAAGGC AAGAGCTGTG CGCTCCTGTC TAAAGTATTC
CCAACCCGTT CTCACACTGT ATCTGCCCAG GGTGGTATTA CAGTAGCGCT GGGCAACGCC
CACGAAGATA ACTGGGAATA CCACATGTAC GATACCGTTA AGGGCTCCGA CTTTATCGGT
GACCAAGACG CTATCGAATA CATGTGTCAA ACCGGTCCAG AAGCCATTAT CGAGCTGGAG
CATATGGGTC TGCCATTCTC CCGTTTCGAA AACGGCAAGA TTTACCAGCG TCCTTTTGGC
GGTCAGTCCA AGAACTTTGG TGGTGAGCAG GCTGCTCGTA CTGCCGCGGC TGCCGACCGT
ACCGGTCACG CCCTGCTGCA CTGTCTGTAT CAGCAGAACG TGAAGAACAA AACTCAGGTA
TTCTCTGAGT GGTACGCTCT TGACCTGGTG AAGAACGAAG ATGGCGCCAT CGTAGGCTGT
ACTGCCATCG ACATTGAATC CGGTGAAATT GTTTACTTCA AAGCCAAGGC CACTGTACTG
GCTACCGGTG GTGCAGGTCG TATCTACGCA TCTACCACCA ACGCGCACAT CAACACCGGT
GACGGTGTGG GTATGGCTTA CCGTGCCGGT GTGCAGCTGC AGGACATGGA AATGTGGCAG
TTCCACCCAA CCGGTATTGC CGGTGCCGGT GTACTGGTAA CCGAAGGTTG CCGCGGTGAG
GGTGGCTACC TTTTGAACAA AGACGGTGAG CGCTTTATGG AGCGTTACGC GCCAAACGCC
AAGGACCTCG CGTCCCGTGA CGTTGTGGCC CGTTCCATGA TGACCGAAAT CCGTGAAGGC
CGTGGCTGTG ATGGTCCTAT GGGTCCACAC ATCAAGCTCA AGCTTGATCA CCTGGGTAAA
GAAACCCTGG AAGCCCGTCT GCCAGGCGTG TGCGAACTGT CACGTACCTT TGCTCACATC
GATCCGGCCG ATGGCCCAAT CCCTGTGATC CCAACCTGCC ACTATATGAT GGGTGGTCTG
CCGACCAAGG TATCCGGTCA GGTAATCCGT AAGAACGACG ACGGCAGCGA AACCGATATC
GTCGGCCTGT TCGCTGTGGG CGAAATCGCT TGTGTATCTG TTCACGGTGC CAACCGTCTG
GGCGGTAACT CGCTGCTTGA CCTGGTGGTA TTCGGCCGTG CGGCTGGTCA GCACCTGGGT
AAGGCGCTGG ACGAGACTGC CGATCCTAAA GCTGCTACCG ACGCAGACAT CGAGCAATCA
CTTGCCCGTC TGAAGCGTTG GGAAAGCAAC AAAGACGGCG AAGATCCTGC GCAAATCCGT
AAAGACCTGC AAATGTGTAT GCAGCTTAAC TTCTCTGTGT TCCGTACCGG TGAAGCCATG
GCCGAAGGCC TCGAGCAACT GCAAGCCATC CGCAAGCGTC TGGAAAATGC CAAGCTGTCT
GACAACTCCA AAGAGTTCAA CACTCAGCGT ATTGAGTGTC TGGAGCTGGA TAACCTGATG
GCCACCGCCA TCGCGACTGC TTACGCTGCT AACTTCCGTA CTGAGAGCCG TGGTGCCCAC
AGCCGTGAAG ACTTCACCGA GCGTGATGAT GACAACTGGC TGTGCCACAG CCTGTTCGAC
CCCGTGACTG AGGCTATGTC CAAGCGCGAA GTGAACATGT CACCCAAGCA CCGTGAAGCC
TTCCCACCGA AGAAGCGTAC CTACTAA
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| Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDNWEYHMY DTVKGSDFIG DQDAIEYMCQ TGPEAIIELE HMGLPFSRFE NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKNKTQV FSEWYALDLV KNEDGAIVGC
TAIDIESGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAYRAG VQLQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGCDGPMGPH IKLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVI PTCHYMMGGL
PTKVSGQVIR KNDDGSETDI VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETADPK AATDADIEQS LARLKRWESN KDGEDPAQIR KDLQMCMQLN FSVFRTGEAM
AEGLEQLQAI RKRLENAKLS DNSKEFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH
SREDFTERDD DNWLCHSLFD PVTEAMSKRE VNMSPKHREA FPPKKRTY
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