| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1416 |
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| Symbol | |
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| ID | 4603668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1718572 |
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| End bp | 1720320 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780766 |
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| Product | hypothetical protein |
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| Protein accession | YP_927293 |
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| Protein GI | 119774553 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0637882 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGTGA TGTCCGCAAT GGGACTGGCC GCCATGGTGC CTGTGGCTGC AAACGCCGCC
GTGACCGGGG CGCAGAAAAC TCTGGTGTTT CTGGTCAACT TTCAGGAAAA CCCCAACGAT
CTGCCCATGA GCGTCAGCGA AGCTGATGCC ATGGTGTTCG GCACCGTCAA TGATTTCTAC
CGTGCGGCCT CAGATAACCA ACTGTGGTTG ACCGGTACCG TGGCTGGTGT GTTCACCGCG
CCCATGTCCA ACCAGGTTTG CAACAACGCC AATACCCTGG CGCAGTCCAT CAATGAACAG
GCGATTGCCG CCGGCGTGCC CCTGAACCAG TATGACCGCT ATGTGTATCT GACCACCAAG
GACGCCTGTC AGTCTGAAGG CTCAGCCACC CTGACCGGTC TGCCATCACG CGCCGTTATC
AATGGTCCTC AGCCTGCCCG CGTTGTTGCA CACGAATTTG GTCACAACCT GGGCCTGGAA
CACGCCGGTG CCTGGGATTG TGATGCCGGT ACGCTGGCGG GTAACTGCCG CGTAATTGAG
TACGGTGACA GCTACAGCAC CATGGGTAAC TCAGATATGG GCTATTTCGG CGCCGAGCAA
AAAGAACAGC TGGGTTGGGT TAGCGCAGCG TCTGGTGCAG TAGCTGTGGC AGCGGAGGAT
GGTGTGTATA CTCTGGGCGC CTATGAGCAG AGCAACGGCC AACCCATCGC GGTGAAAATC
CCCCGCGGTG CCGACCCCGT CACCGGCAAA CAGCGTTGGT TTTATATCGA GTATCGCCAG
TCTCTGGCCC ATGACAGCTT CCTGGCTGCA CGCTCTTACA CCCTGTACCG CGGCGATGTG
ACCGAAGGGG TATTGGTTCG TATGGTCACC GAAGGTGAGC CACGCAGCCG CGTACTGCAC
ATGAAGCCTG ATGCCTACTT CAAGCAAAGA TATGGCATGA ACGACTGGAA AGATCCTGCC
ATGGCCATAG GTGACAGCTT TACCGATCCG GATTCAGGTG TGACTTTCAG TCTCTTGTCT
GCCAATGGCA ACACTGCCGA CATCAGTGTC CAGCTGGGTA GCGCTGCTGG TCAGTGTTTG
AAAGCCGCAC CAACCGTTAC CGCTGTGCAA AGCGTTGCCT CCGGGAATGC CGGTGACACT
GTGCAGTACA GTGTGAGAAT TGAAAACCGT GACTCTGCAG ATTGTGCCGC TACCGATTAC
CGTGTTGCAG CCAGCCTGCT GAGTGGTTGG CAGGCCAACA CTGCCACTGT CACTCTGGCT
CCCGGTGCCA GTCAGCAGGT GACGCTGGCC GTTACTTCTG CCGGCAACAG TGCTGACGGT
AACTACAACG TGCCTGTGAC TGCCACTTCA CTGGCCGACA CCAGCGTTAA AGGCAGCACC
AACCTGACTT ACCAGGTAAT TGCAGCCCCT GCTGCCAGTG AGCTGGTTGC CAACAATGAC
CTGGTGAACA TCAGCAGCAA GCAAGCCGTT ACCATCGCGG TGAAGGCCAA TGACGTGATA
GCCCAGGGTG CCAGTGTGAC AGTGCAGGTT TCTGCCGCCG CTAAAGGCAG CGTGGAAGTA
CTGAGTGATG GCAGCGTACG TTACACTCCT GCCAAGGCGT TCAAAACCAG CGACAGCTTC
AGCTACACCC TGTTTGATGG TATCAGCAGC TCCAGCGCGA CCGTGACTGT GACGCTGAGC
TCATCCACCA CAGATACAGG TGATACCAGC ACTGGCGGCA GCACCGGCGG CAAAGGTAAG
AACCGTTGA
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| Protein sequence | MMVMSAMGLA AMVPVAANAA VTGAQKTLVF LVNFQENPND LPMSVSEADA MVFGTVNDFY
RAASDNQLWL TGTVAGVFTA PMSNQVCNNA NTLAQSINEQ AIAAGVPLNQ YDRYVYLTTK
DACQSEGSAT LTGLPSRAVI NGPQPARVVA HEFGHNLGLE HAGAWDCDAG TLAGNCRVIE
YGDSYSTMGN SDMGYFGAEQ KEQLGWVSAA SGAVAVAAED GVYTLGAYEQ SNGQPIAVKI
PRGADPVTGK QRWFYIEYRQ SLAHDSFLAA RSYTLYRGDV TEGVLVRMVT EGEPRSRVLH
MKPDAYFKQR YGMNDWKDPA MAIGDSFTDP DSGVTFSLLS ANGNTADISV QLGSAAGQCL
KAAPTVTAVQ SVASGNAGDT VQYSVRIENR DSADCAATDY RVAASLLSGW QANTATVTLA
PGASQQVTLA VTSAGNSADG NYNVPVTATS LADTSVKGST NLTYQVIAAP AASELVANND
LVNISSKQAV TIAVKANDVI AQGASVTVQV SAAAKGSVEV LSDGSVRYTP AKAFKTSDSF
SYTLFDGISS SSATVTVTLS SSTTDTGDTS TGGSTGGKGK NR
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