| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1401 |
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| Symbol | |
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| ID | 4603653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1699855 |
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| End bp | 1701189 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780751 |
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| Product | sugar (glycoside-Pentoside-hexuronide) transporter |
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| Protein accession | YP_927278 |
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| Protein GI | 119774538 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
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| TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.738999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0455356 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGAGCG TCAGAGAAAA AATTGCTTAT GGGCTGGGAG ATACCGCCAG CAACATCGTT
TTTCAAACCG TCATGCTGTT CCTGACGTTC TTTTATACCG ATATCTTTGG TATATCGGCG
GCCTATGTTG GCACCATGTT TTTGGCTGTA CGCATCATGG ATGCGGTCAC GGATCCCTTG
ATGGGCTATC TGGCAGACAG GACCAACACC CGCTGGGGCC GCTACCGGCC ATACTTACTG
TGGTTTGCCT TTCCTTTTGC TGCCATCAGT GTACTTGCCT TTACCACCCC GGATTTGAGT
GAAAGTGGCA AGGAATGGTA TGCCTTTGCA ACATACGCAC TCTTGATGCT GGCCTACACG
GCAATCAATA TTCCTTACTG TGCCCTGGGC GCCGCCTTGA CCACCAACCC GGCAGAACGG
GTGTCGGTTC AGTCTTATCG CTTTGTATTT GCCATGCTCG GTGGGGTGAT GGTCAGTGCC
CTTACCCTGC CCCTGGTGGA TTTTTTTGGT CAGGGCGATA AAGCCAAAGG CTATCAGCTC
ACCATACTGG CGATGAGTAT CGTCGGCACT GTGATGTTTT TACTGTGCTT TATCGGTACC
AAAGAGCGCG ACTTCAGCAG CGATGACAAC AGCGGCAACT TCAAGGCCGC CTCAAAGGCC
CTGTGGGCCA ATGACCAGTG GCGGGTATTG TCCGCGGCAG CCATCTTTTT GCTGACCGGC
TTGGTACTTA AATCCACCCT GGCCATCTAC TACGTCAAAT ACTTCCTCGG TCGTGAAGAC
ATGATCAGTG TGTTTGTCAC CAGCGGTGTG GTTGGCAATA TTTTTGGGGT CGCGCTTGCC
AAAAAACTGG CCGACAAAAT GTGTAAGGTG AAAGCCTATA TCCGGCTCCA GCTTATCGCC
GCAGCGCTCT GCATGGCAGC CTGGTTTGTG CCGGCTGACC AATATGTGCT GGCGCTGGTG
TTTTACATCG CCTGGAACTT TACCATCAAC ATGGGCACAC CACTCTTGTG GGCGAAGATG
GCCGATACCG TGGACTACGG CCAGTTTAAA ACCGGCGTGC GCACCACGGG TTTGGTTTAC
TCTTCGGTGA TTTTCTTTAT CAAACTGGGT CTTGCCATTG GTGGCGCTCT GGGGGGCTGG
TTGCTTGCCG CATACGGCTA TCAACCCGAT GTTGCGCAAA CCGAAGAGAC CCGGGCGGGC
ATCTTGTTGT GCTTTACCCT CTACCCAGCG CTGGCATCAA TCGCTGTTGC CTTTGTGATG
CGACACTATA CACTGGACAG CCAACGCGTT GCCGAGATCA GCGTATCTTT GCAACAAAAG
CATTCAGGCA CATAG
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| Protein sequence | MLSVREKIAY GLGDTASNIV FQTVMLFLTF FYTDIFGISA AYVGTMFLAV RIMDAVTDPL
MGYLADRTNT RWGRYRPYLL WFAFPFAAIS VLAFTTPDLS ESGKEWYAFA TYALLMLAYT
AINIPYCALG AALTTNPAER VSVQSYRFVF AMLGGVMVSA LTLPLVDFFG QGDKAKGYQL
TILAMSIVGT VMFLLCFIGT KERDFSSDDN SGNFKAASKA LWANDQWRVL SAAAIFLLTG
LVLKSTLAIY YVKYFLGRED MISVFVTSGV VGNIFGVALA KKLADKMCKV KAYIRLQLIA
AALCMAAWFV PADQYVLALV FYIAWNFTIN MGTPLLWAKM ADTVDYGQFK TGVRTTGLVY
SSVIFFIKLG LAIGGALGGW LLAAYGYQPD VAQTEETRAG ILLCFTLYPA LASIAVAFVM
RHYTLDSQRV AEISVSLQQK HSGT
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