| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1400 |
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| Symbol | |
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| ID | 4603652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1698830 |
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| End bp | 1699828 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780750 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_927277 |
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| Protein GI | 119774537 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.665266 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0917942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACAA TTTATGACGT TTCCTTTCTG GCAGGCGTGT CGCTGGCGAC CGTCTCCAGG
GTGGTGAACA ACACCGGCAA AGTCAGTGAC AAGACCCGTC AAAAGGTCCA CGATGCCATG
GCAAAGCTGG ACTACCGCCC CAATACCATC GCTCAGTCTT TGGCCTCCAA CCGCTCCAAC
AGTATTGGTG TGCTGGTGTC ACAGCTGGAT GGTCCCTTCT ACGGCCCCAT GATGCGGGAG
GTGGAGTCGG CACTGCGCGC TGCCAATAAG CACGTTATCA TCGCAGCCGG CCACAGCGAT
GCGGCACAGG AAAAAGATGG TGTTGAGTTT CTGCTGTCCC GGGGGTGTGA TGCCCTGATT
GTGGATGCCG AAATTCTCTC CAACGGCTAT TTGGTTGAGC TGTGTCAGGG GAAAACCCCG
GTGGTGCTCA TAAACCGGCA TGTGGATGGT ATCGATGAGC GCTGCGTACA CCTGAATAAC
CTTCAGGGTG GTTTGCTCGC CAGCCGCCAT GTTCTGGAAA AGGGCCACAA ACAGATAGCC
TATATCTCCG GGCCGCTGTT TAAGCTCGAT GCCAGAGAAC GTCTCGAAGG CCATCGTCAG
GCATTGGCAG AGCAAGGCAT CGCCTTTGAC GAAAACCTCT TTTATGAAGG GGACTTTCGT
GAAGAAGGCG GCTATGAGGC CATGGCTCAG TTGCTCTCAC GGGGGCGGGA CTTTACTGCC
GTGGTGTGTG CAAACGATCA GATGGCATCG GGTGCCATAG CCCAGTGTTT GGAGCGGGGT
CTGCGGGTGC CCGAAGACAT CTCCTTCGTG GGATTCGATA ATATCCCCTT CCCCCGTTAT
ATCTCGCCCA AACTGACCAC TGTGTGTAAC CCCATTCAGG ACATGGGACG CATGGCGGCC
CACTGGGTGC TGCGCGAAGT GTACGACCAA ACCGACGTGA CGTTTTGCCA CCGCTTTGAG
CCGGAGTTGG TGGTTCGGGA TTCTGTTATC ACACGTTAA
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| Protein sequence | MATIYDVSFL AGVSLATVSR VVNNTGKVSD KTRQKVHDAM AKLDYRPNTI AQSLASNRSN
SIGVLVSQLD GPFYGPMMRE VESALRAANK HVIIAAGHSD AAQEKDGVEF LLSRGCDALI
VDAEILSNGY LVELCQGKTP VVLINRHVDG IDERCVHLNN LQGGLLASRH VLEKGHKQIA
YISGPLFKLD ARERLEGHRQ ALAEQGIAFD ENLFYEGDFR EEGGYEAMAQ LLSRGRDFTA
VVCANDQMAS GAIAQCLERG LRVPEDISFV GFDNIPFPRY ISPKLTTVCN PIQDMGRMAA
HWVLREVYDQ TDVTFCHRFE PELVVRDSVI TR
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