| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1399 |
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| Symbol | |
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| ID | 4603651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1695646 |
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| End bp | 1698549 |
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| Gene Length | 2904 bp |
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| Protein Length | 967 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780749 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_927276 |
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| Protein GI | 119774536 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.11519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0649195 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACCCT TACAATTCAA AAAATCCATG TTGGCTACTC AGGTCTCACT GATGATGGGC
TTGTTGACAG CCATGCCTGT GATGGCGGAG GAAGCCCCCA TCGCCGAAGG CGATATCGAA
GTCATTCAGG TGAAAGGTAT CCGCGGCTCA CAGGCCAAGT CGATGGAGCT GAAACGCCAG
TCTGCCGGTG TAGTAGACGC CATTTCTGCC GAAGATATCG GTAAATTCCC CGACACTAAC
CTTGCCGAAT CTCTGCAGCG CATTACCGGT GTGTCCATCG ACCGCGTTAA CGGCGAAGGC
AGCAAGGTAA CTGTGCGCGG CTTTGGCCCG GATTTTAACC TGGTGCTTTT GAACAATCGC
ACCATGCCCA CGGCTCAGGT GGCCGGTGAA TCTACCCGTT CATTTGAATT CGCCAATCTG
GCCTCTGATG CCGTCAGTGG CGTCGAAATC TACAAAACCG GCAAAGCTGA TATCAGCTCT
GGTGGTATAG GTTCTACCAT CAATATCCGC ACCGCCCGCC CCTTCGATAC CCGCGGTTTG
GTTGCCACTG TCGGTGTGAA AGGTCATCAC GACACCAATG TGGAAGATGG CAGCTCCATC
ACCCCCGAAA TCTCCGGTAT TTTCAGCAAC ACCTTCCTGG ATGACACCCT GGGTTTCGGA
TTAAATGCCT CTTATCAGGA ACGTGACAGC AACATCAAAA AAGCCACCAT CGATGGCTGG
CGCCAGAACA TCGATGGCGA GCTTAACCCC AATGCCGTTG TGGTAAACGA GAACAAAAAC
CCCTACGGCA ACACCTTCTA TGCCCGTAAC ATCGGCTTTG CCAGTCAGGA TACCGAGCGT
GAGCGTACCA ACGCCCAGTT GGTGTTCCAG TATGCCCCGT CCGATACCAT TGAAATGACT
CTGGATTACA CCTATTCCAA GCTCTCGGAT GTCTCCAACG CTGACACCTG GGGTTTGTGG
TTCTCGGGTC CAGGTAACGC CACCTATGCC CATATCAATG AAAACGGCAC CTTTGACTAT
GTGACCGAAG TAGGCGGTGA CTACTCTGGC ACCATGCAGC AGAATGCCTC TGACAACATC
AACAAGTCAC TGGGTTTCAA CATCGAATGG CAAGCGACGG ACAACCTGCT GCTGAGCTTC
GATGCCCACG ACTCCAACGC CAACGCCGAA GGGAAGTTGG GCAACTACGC CGATAACATC
TTCTTTATCC TCGGCGCCTT GAACGTAGCC GATAAAACCT ACGATGCCAC CGGCACCGAG
ATCCCACTGC TTGGCGCCAA CTATGGCACC CTGAACCCCA ACGGGGAGCC ACACCTGCTG
CCTGAGCACT ACGCCTCTTT GTTTGCCGGT GTGCGTGCAG GCCGCAACGA GACTGATGTA
AACCAGTATC AATTTGACGG TCGCTGGCTA AACGAAAACA GCGACGCCCT GTCCTCCATC
GATTTTGGGG TGTCTTTCAC CTCCATGGAA ACCCATGCCC AGGGCTCTTA CACCGGCCCC
ATCAGCGCCG GTTGGTATGG CAACATGGGG TTGTGGAAGG ATGATGTGAG CTACGTTGGC
CTGGGCAGTG ACTTCCTGTC TGACTTCAGC GGCGGCGGCA ACGACATGCT GATCCCTTAC
TACTACAGCT ACGATCAGCA GGCGGCCATG GACAAAGCCC AGGCCCTGTA CGATGTGGAG
TATGTGTCAG CCCCATGGCA GGATGACCAC CGGATTAAAG AAGACACCAC TGCGGCCTAT
GTGCAGGTAA ACATCGATAG CGAATTCAAC AATATGCCGC TGAATATCGT TGCCGGTCTG
CGCTATGAGC AAACCGATGT GACTGCCAGC TCCATGCAAA AAGAAGCGCA GCAGCTGGTG
TGGCTCAACC CGACTGAGTG GCAAACCGTT TATGCGGATG ATTTCTCTTA CAGCCATGAA
ACCCATGACT ACAAAGAGTT TTTGCCAAAT CTGGATATCA ATCTGGAAGT GATGGAAAAC
GTCATGGCGC GTTTCTCATA CAGCCGCACC ATTACCCGTC CGACGCTGGG CTCAATGCGC
GCCACCACGG CACTGACACC TATCCCTAAA GTAGGCTCCC GTACGGGTTT TGCCGGTAAC
CCCGCGCTCA AGCCGTTCAG CTCGAATAAC ATCGACCTGT CGCTGGAATA CTACTACGAC
GACGCCAGCT ACGTATCTGT GGGTTACTTC AACAAGGAAG TGGAAAACTT CCTGATGAAT
ACCATCGAAA CCGTGAAATA CGATCACCTG CTTGACCCCT ATGTTGGTCC TGCGGCGGAG
CAGGCCCGCG CCGAGCTGAT TGCCAACAAC GAAACCCCAA GTGATGAAGC CGTGTTCCAG
TGGCTGATTG ACAACGGTTA CGGCAATGCC GATGGCCGCG TACCTCAGTC AGGTGCCGAT
CCGGTTGCAG ACTGGAATAT CAGCAAGCCA AACAACGTTG AAGACCTGAA CATCAACGGC
GTTGAGCTGG CCTGGCAGCA CTGGTTCTGG GACACCGGCT TTGGTTTTGC TGCCAACTAC
ACCCTGGTGG ATGGCGATAC CGAGTATGAC GTAGAGCGTG TGGATGAGCA GTTTGCCCTG
CCCGGCATGT CAGACTCCGC CAACTTCTCC GTATTCTACG AGAAAGATGG CCTGCAGGGT
CGTCTGGCCT ACAACTGGCG TGACACCTTC CTGTCAGGCA TGGGTCAGGC AGAAGCCGGT
GGTCCTGCAC CCCAGTTTAC CGAAGCCTTT GGTCAGCTGG ATATCAGCGT GAGCTACCAG
CTCACCGATA ACCTGTCTAT CTTCGCTGAA GGTATCAACA TTCTGGAACA GGAAAAACGC
GTTTACGGCC GTTACGAAGA GCAGATGCTG CTGGCTCAGC AAAACTCCGC CCGTTACTCC
ATAGGCGCAC GTTACAGCTT CTGA
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| Protein sequence | MRPLQFKKSM LATQVSLMMG LLTAMPVMAE EAPIAEGDIE VIQVKGIRGS QAKSMELKRQ
SAGVVDAISA EDIGKFPDTN LAESLQRITG VSIDRVNGEG SKVTVRGFGP DFNLVLLNNR
TMPTAQVAGE STRSFEFANL ASDAVSGVEI YKTGKADISS GGIGSTINIR TARPFDTRGL
VATVGVKGHH DTNVEDGSSI TPEISGIFSN TFLDDTLGFG LNASYQERDS NIKKATIDGW
RQNIDGELNP NAVVVNENKN PYGNTFYARN IGFASQDTER ERTNAQLVFQ YAPSDTIEMT
LDYTYSKLSD VSNADTWGLW FSGPGNATYA HINENGTFDY VTEVGGDYSG TMQQNASDNI
NKSLGFNIEW QATDNLLLSF DAHDSNANAE GKLGNYADNI FFILGALNVA DKTYDATGTE
IPLLGANYGT LNPNGEPHLL PEHYASLFAG VRAGRNETDV NQYQFDGRWL NENSDALSSI
DFGVSFTSME THAQGSYTGP ISAGWYGNMG LWKDDVSYVG LGSDFLSDFS GGGNDMLIPY
YYSYDQQAAM DKAQALYDVE YVSAPWQDDH RIKEDTTAAY VQVNIDSEFN NMPLNIVAGL
RYEQTDVTAS SMQKEAQQLV WLNPTEWQTV YADDFSYSHE THDYKEFLPN LDINLEVMEN
VMARFSYSRT ITRPTLGSMR ATTALTPIPK VGSRTGFAGN PALKPFSSNN IDLSLEYYYD
DASYVSVGYF NKEVENFLMN TIETVKYDHL LDPYVGPAAE QARAELIANN ETPSDEAVFQ
WLIDNGYGNA DGRVPQSGAD PVADWNISKP NNVEDLNING VELAWQHWFW DTGFGFAANY
TLVDGDTEYD VERVDEQFAL PGMSDSANFS VFYEKDGLQG RLAYNWRDTF LSGMGQAEAG
GPAPQFTEAF GQLDISVSYQ LTDNLSIFAE GINILEQEKR VYGRYEEQML LAQQNSARYS
IGARYSF
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