| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1397 |
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| Symbol | |
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| ID | 4603649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1691528 |
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| End bp | 1694554 |
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| Gene Length | 3027 bp |
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| Protein Length | 1008 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780747 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_927274 |
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| Protein GI | 119774534 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0795822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0823497 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGATA AGGCATTTAA GCGTAACCGG TTGTCTGCCA CGCTGGCAGC TATCCTAGGC
GTTGGCGCCA TCCCACTGGC ATGGGCTGCT GATGACGCAA CACCCGAAGC CGACGGCGTT
GTGGCAGCCC AGAACGCATC GGAAGAAGCG ATAGAAGTTA TTGAAATTCG TGGGATCAGG
GGCAGTTTAT ATCGTTCCAT GGACTTAAAG CGCGGCGCCA ACGGCGTTGT GGATGCGATT
TCGGCAGAGG AGCTCGGTAA ATTCCCCGAC ACCAACCTCG CGGAATCCTT GCAGCGGATC
ACCGGGGTGA CCGTCAGCCG TGCCAACGGT GAAGGCAGCC AGATCACGGT GCGGGGTTTT
GGTCCGGAGT TTAACCTTAT CACCCTCAAT GGCAGGCAGA TGCCGGGCAC GGGCTATACC
CGTTCCTACA ATCTGGAGAA CCTCTCATCC GAAGGGGTGA AGACCCTAGA GGTGGTTAAG
ACCGCCAGGG CCGATGTGCC CACTGGTGGG CTCGGGGGAA CGGTTAACAT AGTTACTCAC
AAGCCGCTGG ATAACCCCGG CCAGGCATTT ACCTTCTCTG GCAAGGGTAT TTATGATGAG
TCCAATGTGC TTGGTGATGA TGTCACGCCA GAGCTGGCCG CCATTTACAG TAACACCCTG
TTTGATGACC GTTTTGGTGT ATTGGTATCT GTTTCTCATC AGGAGCGGGA CTTCCAGCAG
CAAACTGCCA ACAGTCAGGG GTGGATTGCC CAGACCGACA ATGGCCGCTT GCCAACACTG
GCCGGCGATA AAGGCATAGA CGGGCGTGAA ACAGATGCCG ACGGCAATCC GGTTGCACGC
TTTCGTGATG CCGAAGGCAA TGCAGTGGCA CCGTTTTTCT TCCCCCGTGA CATGAACTTC
AGCATCAATG ATGTGGAGCG TGAACGCACC AACGGCATGG TCACCCTGCA ATTTGTCGCC
ACCGATAACC TGGTTCTGAC CGCCGACTAT GTGGCGACCC GCGCACTGAC TGCTTCCAAT
GGTTTTGGTT GGGGGATCTG GAACTCCTCG ACAGATGGTT CTCCGGTGAT TGGTTATGAG
CTCGATGCCA ACGGCACAGC GCTTTATTCA GACATTCGCG GTGGTGATGG CTCCTTTACC
GCCAATCGCA ATACTACAGA AGTGAATGCC GAGTCCGTTG GCCTGAATAT CGACTGGAGT
CCCAACGAAG CCTGGCGCTT TACCCTGGAC TATCACAACT CCTCCAACGA AATCGACAAT
GGTGCCGATA CAGGCCTTGG CAGTGACGGA CAGGTGATCC TGGGTTCAGA TAAGCTGATT
TCCAAGGTCT ATGACTATCG TACCGGTGAG GTGCCCCATT TTCTGATTAA CTGGAACAAT
GGCACCCATG TGCTGGATGC CGGCGATATT GACTCCAACT TCAGTCAGTT TATTCACTCA
CCGGGTGAGA GTGAGATTGA GCAGGTACAG TTCAACACCA ACTGGTACCC CGAGTTCAGT
GAGCATCTGG TGAAGATGGA CTTTGGTGCG GCTTATACCA AGCAAACCAT GTCGGGCACC
AGTGCCTGGA GTGGCCTGCG TGGCGGCCCC GGATTTAATC CGTCCTATGC GGAAATTTTC
CCTGATGCCA TGTTTGTGTT GCAGGATGCC TCCGGCTTGC TGGACGCCCT TGGGGGGGGG
GGCAGTGCAC TCATGCCCGA TTACTACTAC ACCTTCAACT TCGATGAGGC TGTGGCAAGG
CAGCTTGCCT TTATCACCCC CGAGATAGCC GGTGACAACT ATTACTCCAT CGATCCCTAT
TTTGATGGCA TCGACAGTGC CACCCTGGTG GAAGAAAAGA CGCTGGCGCT GTATCTCACC
ACCCAATGGG GTTTTGACAT TGGCAATGTG CCGGTGAATG TGAATCTTGG GCTCAGGTAC
GAGCAAACCG ATGCCTCCAG TACGGTGAAG CAGCGGGTTG AGAATCAGGT GGTATGGGCC
AGCCCTACTG AGTGGATCAT GCAGTATGCT CCCGGTGGTG ATGATAACTA CTTCACTCAG
GGTGGGGATT ACGATGTCTG GCTGCCGATG CTGGATATCA GCGCCGAGCC ACTGGAGGAT
GTCGTCGTGC GCTTTTCCGC CGGTAAAACC ATCGCCAGAC CGCTGCTGGG TGACATGGTG
GCAGGCAGAA ACCTGAGCGG TAGCCCCAAG ATTGGTGCCC GCCGTGGTAG CCTCGGTAAT
CCCGGGCTGT TGCCGCTGGA GTCGGTCAAC CTGGATCTGT CATTTGAGTA CTACTACGGC
GATGCAAGCT ACGCCTCTGT TGGCTTGTTT AAAAAGTATG CCGATAACTA TGTGTCTCAA
AAAACCACTC AGCTGACCAT CGAAGGCTTG CACGACGTCT ATAACAGTCC CCGTTATCAG
GAGGCCATCA GCCAGCTTGA AGCGGCAGGT ACACCTGTCA GCGAAAACAG CATCTTCGCC
CAGATGATTG CCAACGGACA TGGCAATGCC GATGGGCAGA TAGTGCCCCT TGCCAGCGAC
CCGCTGATTG TATGGGATAT CACCAGTCCC TTTAACAGTG ACAGCAAGAC GGTACAGGGC
ATAGAGCTGG CGCTGCAGCA TGTATTCGGT GAAACCGGTT TTGGTGTGGG TGTTAACGGT
ACCTTCGTCG AAGGGGATGT GACCTACGAT CCCTATAGCC TGGCACCGCA AAATCCACTC
AGTGGTATCG GTGATTCGGC TAACTTCCAG GCCTTTTATG AGAAAGATGG CCTGTCGGTG
AAGTTGACCT ACGCCTGGCG AGACAGCTAC CTGATTGGTG TGGGTCAGTC CCAGGGTTCT
GCCGATGCGC CACCACAGTT TGCCAAGACC TTTGGCCAGC TCGATGCCAG CATTAACTAC
GATGTGAACG AGCATCTGAC GGTATTTTTT GAGGGCATAA ACCTTAACAA CGAAACCGAA
GAAGGGTATG GCCGTTTCGA GGAGCAGTTC CTGTTTGCCC GCCAGTACGG CAGCCGTTAC
TCACTCGGCG CACGGGTGCG TTTCTAA
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| Protein sequence | MLDKAFKRNR LSATLAAILG VGAIPLAWAA DDATPEADGV VAAQNASEEA IEVIEIRGIR
GSLYRSMDLK RGANGVVDAI SAEELGKFPD TNLAESLQRI TGVTVSRANG EGSQITVRGF
GPEFNLITLN GRQMPGTGYT RSYNLENLSS EGVKTLEVVK TARADVPTGG LGGTVNIVTH
KPLDNPGQAF TFSGKGIYDE SNVLGDDVTP ELAAIYSNTL FDDRFGVLVS VSHQERDFQQ
QTANSQGWIA QTDNGRLPTL AGDKGIDGRE TDADGNPVAR FRDAEGNAVA PFFFPRDMNF
SINDVERERT NGMVTLQFVA TDNLVLTADY VATRALTASN GFGWGIWNSS TDGSPVIGYE
LDANGTALYS DIRGGDGSFT ANRNTTEVNA ESVGLNIDWS PNEAWRFTLD YHNSSNEIDN
GADTGLGSDG QVILGSDKLI SKVYDYRTGE VPHFLINWNN GTHVLDAGDI DSNFSQFIHS
PGESEIEQVQ FNTNWYPEFS EHLVKMDFGA AYTKQTMSGT SAWSGLRGGP GFNPSYAEIF
PDAMFVLQDA SGLLDALGGG GSALMPDYYY TFNFDEAVAR QLAFITPEIA GDNYYSIDPY
FDGIDSATLV EEKTLALYLT TQWGFDIGNV PVNVNLGLRY EQTDASSTVK QRVENQVVWA
SPTEWIMQYA PGGDDNYFTQ GGDYDVWLPM LDISAEPLED VVVRFSAGKT IARPLLGDMV
AGRNLSGSPK IGARRGSLGN PGLLPLESVN LDLSFEYYYG DASYASVGLF KKYADNYVSQ
KTTQLTIEGL HDVYNSPRYQ EAISQLEAAG TPVSENSIFA QMIANGHGNA DGQIVPLASD
PLIVWDITSP FNSDSKTVQG IELALQHVFG ETGFGVGVNG TFVEGDVTYD PYSLAPQNPL
SGIGDSANFQ AFYEKDGLSV KLTYAWRDSY LIGVGQSQGS ADAPPQFAKT FGQLDASINY
DVNEHLTVFF EGINLNNETE EGYGRFEEQF LFARQYGSRY SLGARVRF
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