| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1355 |
|---|
| Symbol | |
|---|
| ID | 4603607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1643758 |
|---|
| End bp | 1644714 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639780705 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | YP_927232 |
|---|
| Protein GI | 119774492 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02249] integron integrase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.73063 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACACA GTCCCTTCCT GAATGCTGTC CGCGACAGTA TACGTTTGAG AGGCTACAGC
TTGCGCACGG AGAAAACTTA CCTTCATTGG ATTAAGTTTT ACATTCTTTT CAATCAAAAA
CGCCATCCTG ACACTATGGG CAGCGCGGAA ATTACCGCGT TTTTAACCTA TCTTGCTGTA
GAGCGCCATG TGGCCGCGAA TACCCAAAAA GTGGCCTTAA ATGCGTTGAT CTATCTGTAT
CAAAAGTTTT TACAGATTGA GCTTGGCGAG TTGCCTTTTT CATTGGCCAC CAAGCAGCGT
TCTTTGCCCA TCGTCGTCAC ACAGACAGAG GTCGCACATA TCCTCGCTAA ACTGAGTGGG
GTTCACTTAC ATGTGATTCA AATGCTCTAC GGCAGTGGGC TCAGAGTGAC AGAATGTCTC
AGGCTTAGGG TGCAGGATGT CGACTTGGAG CGGTTATCTG TGACCGTGCA TGACGGTAAA
GGGAATAAGG ACCGCCAAAC GTTGCTCAGC CGAAGTTGCC TGAATTGGTT ACCGGATCAA
ATTGAACATA GTCTGAATAT CCAGCAAAAA GACAATCAAC GTGGTATTGG ACCATCGATG
CCTACAGCAC TTTCGGTAAA GTACCCGAAT GCCTTTCGCG AACCTGGCTG GATGTATTTG
TTTCCGAGTA GTGGATTATG CCCTCATCCT ATCACCGGTG AAATTTGCCG CCATCATCTT
CACGACAGTG CGATTCGCAA AGCGTTGAGA ATCGCGGTGC GTCATGCTGG GGTGCGCAAA
AAGGTGAATT GCCATACTTT CCGTCATTCC TTCGCTACTC ACTTGCTGCA GGCCGGATAC
GATATCCGTA CTGTGCAGGA GTTATTGGGC CATAACGATG TAAAGACAAC CCAGATTTAC
ACCCACGTAC TGGGCCAGCA TTACGCCGGA ACAGTCAGCC CCCTTGATCG GTTGTGA
|
|---|
| Protein sequence | MTHSPFLNAV RDSIRLRGYS LRTEKTYLHW IKFYILFNQK RHPDTMGSAE ITAFLTYLAV
ERHVAANTQK VALNALIYLY QKFLQIELGE LPFSLATKQR SLPIVVTQTE VAHILAKLSG
VHLHVIQMLY GSGLRVTECL RLRVQDVDLE RLSVTVHDGK GNKDRQTLLS RSCLNWLPDQ
IEHSLNIQQK DNQRGIGPSM PTALSVKYPN AFREPGWMYL FPSSGLCPHP ITGEICRHHL
HDSAIRKALR IAVRHAGVRK KVNCHTFRHS FATHLLQAGY DIRTVQELLG HNDVKTTQIY
THVLGQHYAG TVSPLDRL
|
|---|
| |