| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1337 |
|---|
| Symbol | |
|---|
| ID | 4603589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1629732 |
|---|
| End bp | 1631531 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780687 |
|---|
| Product | ABC transporter, ATP-binding protein MsbA |
|---|
| Protein accession | YP_927214 |
|---|
| Protein GI | 119774474 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.870575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAG CTCATAATCA GGAAGTTTGG ACTGTGTTCA AACGCCTCAT GGGGTACCTC
AAACCCATGA AGTCCATCTT TATCGTCTCG GTTATTGCAC TTTTGGTCTA TGGTGCAGTA
GACGCAACCT TTATTGCTTT TATCCAACCC TTTATTGATA AAGGCTTTTC CGGTGTTGGT
ATGTCGGGAA GTGTCAATAT GGGTACTACA TCCGGATTTG ATTCCGGCAA CAGCGTACTC
TTTTGGGCAC CCTTTGTTGT CGTGGGGCTG TTTACCCTGA GGGGCCTGGC CAACTTTGTC
TCCACCTATG GTATCTCCTA CATGAGTGCC AAGCTCATCA TGGACATGCG CCAGCAGGTG
TTTGAGCATT ATCTGACCCT GCCGGTGAGT TACATCGACA AGGAAAATTC AGGTAACCTT
ATTTCCCGCG TCACCTTCGA TACCGAACAA ATCGCCAGGG CGTCCGGCAG CGCGCTGATT
TCCATCGTCC GTGATGGCGT GACCGTCATC GGCATGCTGG GGCTCATGTT TTACAACTCC
TGGAAGCTGT CGCTCTGCAT CCTGATTGTG GGCCCAATCA TAGGATTGGT GATAGCTACG
GTCAGCCGCC GTTTCCGTAA GATTTCCCGC CAAATTCAAA GTGCCATGGG CGGCGTCACT
GCGGTGACCG AGCAGATGAT CAAGGGCCAT AAAAACGTGC TCGCTTTTGG CGGTCAGGAG
ACCGAGGCCA AGCGTTTTGC CCAGGTTAAC GACCACAATC GCCACCAGAA TATGAAGCTT
GCCGTGGCTC AGGCCATCAG CCAGCCCACT ATCATGATTA TCGGCTCTTT TGCGCTGGCC
TTTGTGCTCT ATGCCGCCAG TTTTGATGCC CTGAAGAGTG AGCTGACCGC AGGTACCTTC
GCCACTGTGC TTGCCGCCAT GATGGCAACC TTGCAGCCCA TCAAGAACCT GACCCGCGTT
AACGCCGAAT TCCAGCGCGG TATCGCCGCC TGTACCACGG TATTTGAGCT GCTCGATACA
CCCGCCGAAC ATGACAAGGG CACATTTGAA ACCGAGAGAG TCAAGGGGCA TGTCCGTTTT
GAGCAGGTGG CATTTCGCTA CGAAGGCCAG GAGGGCAGAG CCCTCGACGG TATCAGCTTT
GATGTGCCGC CGGGTAAAAC CCTGGCGCTG GTGGGGCGTT CCGGCTCGGG CAAATCAACC
ATTGCCAGCC TTATCAATCG CTTTTATGGC GGACTCGAAC AGGGGGCTAT CGAGCTCGAT
GGCGTCAATG TTGAGGACTA TCGCCTTAAA AACCTGCGCA GCCAGGTGGC GCTGGTCAGT
CAGCAGGTCA CCCTGTTTAA CGACACCATT GCCAACAATA TCGCCTATGC CTGCCCATGG
GCGGTGACCC GCGAGCAAAT AGAGCAAGCG GCCACACTGG CCCACGCCAT GGAATTTATC
AGTAAGCTGC CCAGCGGCCT CGATACCCAG GTAGGCGAAA ACGGCGTGCT GCTTTCCGGT
GGTCAGCGCC AGCGTATCGC CATTGCCCGC GCCATGCTGC GTAATGCTCC CGTACTCATC
CTCGATGAGG CCACCTCGGC ACTGGACACA GAGTCTGAGA AGGCCATTCA GGAAGGACTT
GAGAACCTGC GACAAAACCG CACTTCCATC GTGATTGCTC ACCGCCTGTC CACCATCGAA
AGTGCCGATG AGATTTTGGT GATAGAGCAG GGACGTATTG TGGAGCGCGG CAACCACAAG
TCACTGTTGG CGCAGGATGG TATGTACGCC AAACTCTATC AAATGCAGTT TACCGGCTGA
|
|---|
| Protein sequence | MTTAHNQEVW TVFKRLMGYL KPMKSIFIVS VIALLVYGAV DATFIAFIQP FIDKGFSGVG
MSGSVNMGTT SGFDSGNSVL FWAPFVVVGL FTLRGLANFV STYGISYMSA KLIMDMRQQV
FEHYLTLPVS YIDKENSGNL ISRVTFDTEQ IARASGSALI SIVRDGVTVI GMLGLMFYNS
WKLSLCILIV GPIIGLVIAT VSRRFRKISR QIQSAMGGVT AVTEQMIKGH KNVLAFGGQE
TEAKRFAQVN DHNRHQNMKL AVAQAISQPT IMIIGSFALA FVLYAASFDA LKSELTAGTF
ATVLAAMMAT LQPIKNLTRV NAEFQRGIAA CTTVFELLDT PAEHDKGTFE TERVKGHVRF
EQVAFRYEGQ EGRALDGISF DVPPGKTLAL VGRSGSGKST IASLINRFYG GLEQGAIELD
GVNVEDYRLK NLRSQVALVS QQVTLFNDTI ANNIAYACPW AVTREQIEQA ATLAHAMEFI
SKLPSGLDTQ VGENGVLLSG GQRQRIAIAR AMLRNAPVLI LDEATSALDT ESEKAIQEGL
ENLRQNRTSI VIAHRLSTIE SADEILVIEQ GRIVERGNHK SLLAQDGMYA KLYQMQFTG
|
|---|
| |