Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1336 |
Symbol | |
ID | 4603588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1627401 |
End bp | 1629698 |
Gene Length | 2298 bp |
Protein Length | 765 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639780686 |
Product | DNA internalization-related competence protein ComEC/Rec2 |
Protein accession | YP_927213 |
Protein GI | 119774473 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.62013 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGAACC CATTTCTGCT GGGCTTTTGT GCCCTTGTCA TCTCATCGCT GCTCTGGCCA GTGCTGCCGC CCTGGCCGGC CTGCCTGCTT TTGCTTGTGG CATTGGGGTG TTACCGCAAG TTGCCTGTGC TCAGTGGAGC CCTGACTGCC GTGGCGTGGG TTGCTGTGTA CACCCATATG CTGTTCGATT ACAGCCACCT GCAACAAGCC GGTGATTCCT GGGTGCGTGG CGAGATAATA GCACCTGTGT CTGACAGCGG CGACTGGCAG AGTATAGATA TACGTCTTGT TAAACCAAAA TTAATCTGGC CTGTTGAGGG CAATATCAGG CTCAACTGGC GAACAACTGA CCAAATTCGT CCCGGGGAGC AGTGGGAATT TCGTCTTGCA CCCCGTTCCA TCACCTCGCC CCTCAACGAA GGCGCCTTCA ACGGTCAGCG TTACCTGCTA TCACGCCATG TGGGTATCAA GGCAAGAGTG CTGGAAGCAA GAAAAGTATC CGAGGCGTCA GGGCTTCGCG GGCTATTACT GGAGCACATT GGCCATGCCA TATCGGAGAA ACCCCGGCAG GCGCTGCTGT ACCCACTGCT GACGGGGGAA CAGCAGGGCA TAGATGCGCA GACCTGGCAG CGGCTCAGGC AAACCGGCAC CGGGCACCTG ATGGCCATCT CCGGGTTGCA TATGTCGGTG CTCGGAGCCT GGCTGTTGCT GCTGTGCCGC GCGCTGTTGA CCTCGTTTGC GCCGCGCCAG GACAGGCGTA ATTTGGTGAT TGCCATGATA GTCGCCACTG TGGGGTGTCT GCTCTATGGT CTGCTGGCGG GCATGGGCAT TCCTACCCGC CGGGCCTTTA TCATGCTGGC ATTGGTGGTG CTGCTGACCC TCAGTCGCCG TTTCGCCTCG CCCTGGGAGC GTTTGTTGTA CGCCCTTGCC GCTGTGTTGT TTCTCGATCC TTTGTCGCCA CTGTCTGCCG GATTTTGGCT GTCTTTTGGC GCCATCGTGA TTATGTTACT GCTATTGGAC CGGCCGCCCG CCCACCTTGA GGGTGTCCCC GGTCGATTAA AGCACTACCT GATGTCGCTG GTGACGCTGC AGTTGGCACT CAGTATCGGA CTGGGAGTAT TGCAGCTGGT GCTCTTTGGC GGTGTCAGTG TCCATAGCCT GTGGATTAAT CTGCTGATGG TGCCCTGGTT TTCGCTGGTG GCCATTCCCC TGGCGTTGGC AGGGCTTGTG TTTTTTGTTC TCTTGCTGCC TTTTGGGATA TTGGCCGACT GGGCGTTTAC TCCCGCCCTC ATGGCATTGA TACCGCTGGA TGGGCTTCTT ACGTTCAGTG ACCACTTACC CGGCGCCTGG ATAAGCGTGC CGGCACAGTT GATTGCGCCC CTGTGTTTTG CCATTGCAGG CGCTGTTTTA TTGTTTTTGC CTTTGGCGCG GGGTGTTAAG TGGGTGAGCG CCTCCTTACT GTTGCCGCTA CTGATAACTC TGAGTGTGAA AGGCGGGCCC CAATGGCAGA TGCATTTACT GGATGTAGGG CAGGGGCTGG CCGTCGTGGT TTTCAGCCGG GATCAAACAC TGGTGTACGA CACCGGATTG GCCTTTGGTG ACACCTTCTC CCATGGTGAG CGAACCCTGG TGCCATTTTT GCGGGCCAAG GGACGTAATC ACATCGATGT GTTGGTCATC AGCCATGAGG ATAAAGACCA TGCCGGTGGC GCCGCCGCGC TGGCCAGAGC AATGCCAGTC CACTTACTCA TCAGCGATAC CCGGGCTGCA AGGGATACAC TGGCGATGGA ACATGCGCCT TGCCGCCCTC AGGCATTCGC CCTTGGCAAT CTGTGGGTAG AGGTCCTGTC GCCCGCAGAC TCACCGGCTG GAAGAGTAGA CAATAATGCT TCCTGTGTGG TGACAGTGGG CGATGGTCAT TCGCGGCTGC TGTTGCCCGG CGACATTGAA GCCGAAGGGG AGACGCGGCT CCTTGGCAGT GGCGAGGCGT TGAACGCCAA TGTCTTAGTG GCACCCCACC ATGGCAGCCT GACGTCATCG ACTCCGGCCT TTGTCGCGGG CGTAGCACCG GCCATCACCC TCTTTGCTGC CGGCGCCAAC AACAGATACG GTTTTCCTAA AGACGCCGTG GTGCAGCGAT ACCTGGCCCA GGGCAGTCAA ACGTTTACTG CGGCGGATAC CGGCCAGATA AGCCTGTACC TTGATGATGA AATCACAGTG AAAACCTATC GGGGTTCGCT GGCCCCTTTT TGGTATAACC GGGTCTTTGG AGTTGGTGGC AGGCCGATTA CAGAGTAG
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Protein sequence | MKNPFLLGFC ALVISSLLWP VLPPWPACLL LLVALGCYRK LPVLSGALTA VAWVAVYTHM LFDYSHLQQA GDSWVRGEII APVSDSGDWQ SIDIRLVKPK LIWPVEGNIR LNWRTTDQIR PGEQWEFRLA PRSITSPLNE GAFNGQRYLL SRHVGIKARV LEARKVSEAS GLRGLLLEHI GHAISEKPRQ ALLYPLLTGE QQGIDAQTWQ RLRQTGTGHL MAISGLHMSV LGAWLLLLCR ALLTSFAPRQ DRRNLVIAMI VATVGCLLYG LLAGMGIPTR RAFIMLALVV LLTLSRRFAS PWERLLYALA AVLFLDPLSP LSAGFWLSFG AIVIMLLLLD RPPAHLEGVP GRLKHYLMSL VTLQLALSIG LGVLQLVLFG GVSVHSLWIN LLMVPWFSLV AIPLALAGLV FFVLLLPFGI LADWAFTPAL MALIPLDGLL TFSDHLPGAW ISVPAQLIAP LCFAIAGAVL LFLPLARGVK WVSASLLLPL LITLSVKGGP QWQMHLLDVG QGLAVVVFSR DQTLVYDTGL AFGDTFSHGE RTLVPFLRAK GRNHIDVLVI SHEDKDHAGG AAALARAMPV HLLISDTRAA RDTLAMEHAP CRPQAFALGN LWVEVLSPAD SPAGRVDNNA SCVVTVGDGH SRLLLPGDIE AEGETRLLGS GEALNANVLV APHHGSLTSS TPAFVAGVAP AITLFAAGAN NRYGFPKDAV VQRYLAQGSQ TFTAADTGQI SLYLDDEITV KTYRGSLAPF WYNRVFGVGG RPITE
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